Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12950 1190 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) AT5G12960 1152 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G206000 [exp] 1569 / 0 AT5G12950 1154 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031258 [exp] 1306 / 0 AT5G12950 1128 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) Lus10031829 [exp] 1249 / 0 AT5G12950 1078 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF07944 [poplar] [flax] Glyco_hydro_127 Beta-L-arabinofuranosidase, GH127
Representative CDS sequence Show only first row Show all	>Potri.001G018200.1 pacid=42793639 polypeptide=Potri.001G018200.1.p locus=Potri.001G018200 ID=Potri.001G018200.1.v4.1 annot-version=v4.1 ATGAAGGGTTTGATTGTTTTGGTTGTGTTGTCCATGCTATGTGGTTTTGGTACGAGCAAGGAGTGTACAAACACTCCTACTCAGTTATCGTCGCATACAT TTCGATATGCACTGCTATCATCAGAGAATGAAACTTGGAAAGAAGAAATGTTTGCACACTACCATTTGACACCAACTGATGATTCAGCTTGGGCTAATTT GTTGCCAAGAAAGATACTTAGAGAAGAAGATGAGTATAGTTGGGCAATGATGTATAGGAATTTGAAAAGTCCTCTTAAATCCTCTGGGAATTTCCTCAAG GAAGTCTCATTGCATAATGTGAGATTGGATCCAAGTTCAATTCATTGGCAGGCTCAACAAACAAATTTGGAGTACTTGTTGATGTTGGATGTGGATAGCT TGGTGTGGAGCTTTAGGAAAACTGCAGGTTTGTCTACACCAGGCACAGCTTATGGTGGTTGGGAGGCCCCGAATTGCGAGCTTCGGGGTCATTTTGTAGG GCACTACTTGAGTGCATCAGCACAGATGTGGGCTAGCACTCACAATGATATTCTCGAAAAGCAAATGTCTGCGGTAGTATCTGCTCTATCTTCCTGTCAG GAGAAAATGGGCAGCGGATACCTTTCTGCTTTCCCATCTGAGTTATTTGATCGGTTTGAAGCTATAAAGCCTGTCTGGGCTCCTTATTACACTATTCATA AGATCCTGGCAGGTCTTTTGGACCAATATACATTTGCAGATAATGCTCAAGCTTTAAAAATGGTGAAGTGGATGGTTGATTACTTTTATAATCGAGTACG TAACGTTATAACCAATTTCAGTGTGGAAAGACATTATCAATCACTGAATGAGGAAACTGGTGGCATGAATGATGTCCTTTACAAGTTATTCAGCATTACT GGAGATCCAAAACATTTGGTGTTGGCTCACCTGTTTGACAAGCCTTGCTTCCTTGGTTTGCTTGCAGTACAGGCTGAAGACATATCAGGTTTCCACGCCA ATACACACATCCCTATCGTTATTGGTGCACAGATGAGATATGAAATCACTGGAGATCCACTTTATAAGGATATAGGGACATTCTTCATGGATATAGTCAA CTCTTCTCACAGCTATGCAACTGGAGGAACTTCTGTTAGCGAGTTCTGGTCAGATCCAAAGCGACTGGCTAGCACATTACAGACTGAAAATGAGGAATCA TGCACAACTTACAATATGCTGAAGGTCTCCCGCCACCTGTTCAGATGGACCAAAGAAATGGCTTATGCAGATTATTATGAGCGTGCTCTGACAAATGGTG TGCTAGGCATCCAAAGAGGAACAGAGCCTGGAGTGATGATATACATGCTTCCACAACATCCCGGAAGTTCCAAAGGCAAAAGCTATCATGGATGGGGGAC ATTGTACGATACTTTTTGGTGCTGCTATGGAACAGGAATTGAATCATTTTCAAAGCTGGGAGATTCCATATATTTTGAAGAGGAAGGAGAAGCCCCAGGT CTTTACATTATTCAGTATATATCAAGCTCTCTTGATTGGAAATCTGGACAGATCATGATCAATCAGAAAGTTGATCCTGTTGTTTCTTCGGATCCTTATC TTCGGGTGACTTTCACCTTTTCTCCAAACAAGGGGTCAAGCCAAGCATCTACCTTGAATTTGAGGATACCAGTTTGGACACATTTAGATGGTGCTACCGC AACAATAAACTCTCAGAGTTTGGCTATACCGGCTCCAGGTAGTTTCTTATCAGTCAATAGAAAATGGAGCAGTGGTGACAAATTAAGCCTACAGCTTCCC ATTAGTTTGAGAACAGAGGCCATACAAGATGACCGGCACCAGTATGCTTCTATTCAGGCAATACTCTATGGTCCTTACCTGCTTGCTGGTCATACCAGTG GTGACTGGAACCTCAAAGCCGGGTCTGCTGGTTCTCTTTCAGACTCTATAACACCAATCCCTGCCTCTTACAATGAACAACTAGTATCTTTTTCCCAAGA CTCTGGAAATTCAACTTTTGTGTTAACAAATTCAAACCAGTCAATTACAATGGAAGAGCACCCGAAATCTGGCACTGATGCTTGTCTTCAAGCAACATTT AGAATTGTCTTTAATGACTCTTCTTCCTCCGAAGTCCTCGGAATTAATGATGTTATTGACAAATCAGTGATGCTTGAACCATTTGATCTTCCTGGAATGC TTTTAGTGCAGCAAGGAAAAGACAGCAGCCTTGCCGTCACAAATTCTGCTGCAGATGATGGTTCATCTATCTTCCATGTGGTTTTGGGACTAGATGGAAA AGATGGAACTGTGTCCTTGGAATCAGGAAGCCAGGAGGGTTGCTATATATACAGTGGTGTCAATTACAAGTCAGGCCAGAGCATGAAGCTTAGCTGCAAG CTAGGGTCCTCAGATCCAGGATTTAATCAGGGAGCCAGCTTTGTAATGAACAAAGGACTAAGTGAATATCATCCAATCAGCTTTGTGGCAGAGGGGGACA AAAGGAATTTTCTTCTTGCACCATTACATAGTTTGAGGGATGAATTTTACACCATTTATTTTAACATTCAAGCTTAA
AA sequence Show only first row Show all	>Potri.001G018200.1 pacid=42793639 polypeptide=Potri.001G018200.1.p locus=Potri.001G018200 ID=Potri.001G018200.1.v4.1 annot-version=v4.1 MKGLIVLVVLSMLCGFGTSKECTNTPTQLSSHTFRYALLSSENETWKEEMFAHYHLTPTDDSAWANLLPRKILREEDEYSWAMMYRNLKSPLKSSGNFLK EVSLHNVRLDPSSIHWQAQQTNLEYLLMLDVDSLVWSFRKTAGLSTPGTAYGGWEAPNCELRGHFVGHYLSASAQMWASTHNDILEKQMSAVVSALSSCQ EKMGSGYLSAFPSELFDRFEAIKPVWAPYYTIHKILAGLLDQYTFADNAQALKMVKWMVDYFYNRVRNVITNFSVERHYQSLNEETGGMNDVLYKLFSIT GDPKHLVLAHLFDKPCFLGLLAVQAEDISGFHANTHIPIVIGAQMRYEITGDPLYKDIGTFFMDIVNSSHSYATGGTSVSEFWSDPKRLASTLQTENEES CTTYNMLKVSRHLFRWTKEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQHPGSSKGKSYHGWGTLYDTFWCCYGTGIESFSKLGDSIYFEEEGEAPG LYIIQYISSSLDWKSGQIMINQKVDPVVSSDPYLRVTFTFSPNKGSSQASTLNLRIPVWTHLDGATATINSQSLAIPAPGSFLSVNRKWSSGDKLSLQLP ISLRTEAIQDDRHQYASIQAILYGPYLLAGHTSGDWNLKAGSAGSLSDSITPIPASYNEQLVSFSQDSGNSTFVLTNSNQSITMEEHPKSGTDACLQATF RIVFNDSSSSEVLGINDVIDKSVMLEPFDLPGMLLVQQGKDSSLAVTNSAADDGSSIFHVVLGLDGKDGTVSLESGSQEGCYIYSGVNYKSGQSMKLSCK LGSSDPGFNQGASFVMNKGLSEYHPISFVAEGDKRNFLLAPLHSLRDEFYTIYFNIQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	0	1
AT5G62865			unknown protein		Potri.015G073800 [exp]	2.00	0.8979
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	6.00	0.8833	Pt-ATNAC2.2
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087400 [exp]	6.70	0.8805	Pt-CYSP2.1
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	7.41	0.8593	HB1.3
AT2G03360			Glycosyltransferase family 61 ...		Potri.008G092700 [exp]	8.00	0.8616
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	10.95	0.7982
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	12.36	0.8355
AT5G42785			unknown protein		Potri.002G034300 [exp]	12.96	0.8246
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	14.07	0.7662
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.003G188500 [exp]	14.49	0.8400	Pt-4CL.4

Compare expression of checked genes

Potri.001G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.