Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20830 471 / 3e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 460 / 4e-161 Protein kinase superfamily protein (.1) AT3G25250 296 / 2e-96 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 280 / 6e-91 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G34650 239 / 3e-74 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G55910 239 / 9e-74 D6PK D6 protein kinase (.1) AT5G47750 242 / 1e-73 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT3G44610 237 / 2e-73 Protein kinase superfamily protein (.1) AT3G12690 239 / 9e-73 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G79250 237 / 2e-72 AGC1.7 AGC kinase 1.7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205800 [exp] 724 / 0 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G248900 [exp] 272 / 2e-87 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G236200 [exp] 248 / 3e-77 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 241 / 1e-74 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 239 / 6e-72 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.009G146500 [exp] 232 / 1e-71 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186200 [exp] 232 / 1e-71 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 234 / 8e-71 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.004G186300 [exp] 239 / 9e-71 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031830 [exp] 476 / 3e-167 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038221 [exp] 277 / 8e-89 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031259 [exp] 263 / 5e-86 AT3G20830 257 / 2e-84 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 268 / 3e-85 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020572 [exp] 248 / 2e-77 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10006272 [exp] 248 / 2e-77 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 238 / 1e-73 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10036150 [exp] 233 / 4e-72 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10016629 [exp] 236 / 2e-71 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 236 / 3e-71 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G018300.1 pacid=42793354 polypeptide=Potri.001G018300.1.p locus=Potri.001G018300 ID=Potri.001G018300.1.v4.1 annot-version=v4.1 ATGGAGCTCCCACCACCCTTCCCAAGACCACCACCTCCTCCACCACCACAAGACCAGCAACACCAGAAAGATTTAGACTTTGACAGCATTAGAGCCATCA AAGTCCTCGGCAAAGGAGCCATGGGGACAGTCTTCCTTGTACACAACCAAGAAACTGACTCCACAGCCAAGAACCGATTTGCCCTCAAAGTAGTCGAGAA ATCCACCCTCCATACCAAATTCGACGCCGAACGCCGTGCACGGTGGGAGATCCAAGTCTTGAACCAATTATCCACCCCAAAAACAACCCACCCATTTCTC CCCAACCTCATTTCCTCCATAGAAACCCAAGAATTCCTCGCTTGGTCTGTCCCCTTTTGTCCCGGTGGTGACCTCAACGTCCTCCGCCACCGCCAAAACG ACCATGTTTTCTCCCCTGCTGTAATCCGTTTTTACTTAGCTGAAATCGTTTGTGCTCTTGATCACCTCCACCAAATGGGCATTGTTTACAGAGACCTAAA GCCTGAGAACATTTTGATACAACATTCCGGTCACGTTACTCTTACAGACTTTGATCTTTCTCGTACGTTAACGAGAAAAACGGTAAGAAATCTTGTCCCT AACGCCGCCGCGAGCTGCAATAATTTAATCACCGTCAGCGAAATTGAACAGGAACCTCAAAAGAAGCAGCAACAACATCATATAAGGAACTTGACGAGGT GGTGGTTTGTTAATGATGTTCAACACAAAAAGAACGGGCTAAAGAAGGCAAAATCTGCACGAGTTAGCCCGGTGAGTCGGAGAAAACTAAGCTTCAACAA TGGAGAACGGTCCAACTCGTTCGTGGGCACAGAGGAATATGTCTCGCCGGAGGTTGTAAGAGGAGATGGGCACGAGTTCGCTGTTGATTGGTGGGCTCTT GGAATTTTGAGCTTCGAGATGTTATACGGGACGACGCCTTTTGTAGGGAAGAACCGGAAGGAAACGTTTCGAAACGTATTGGCCAAGAAGCCGGAGTTTA TCGGGAAACGAAACGAGTTAACAGACTTGATTGAACGGCTGTTAGAGAAGGACCCCACACAAAGGTTGGGGTATCAACGTGGAGCTTGTGAGATTAAGGA GCATGTGTTTTTTAAGGGTGTAAGGTGGGACCTATTAACGGAAGTCCTAAGACCGCCGTTTATTCCGTCGAGAGACGACGGGGAGTTAACGGAGAGGGCA ACGGCAGCTGGGGTGGATATAAGGGAGTATTTTAAAGATTTAAGGGCGCCACCTCCGTCAATGCCTCCGTCACCGTCTTCGGATTATTACATGAAATTGT CAGAATTCTGA
AA sequence Show only first row Show all	>Potri.001G018300.1 pacid=42793354 polypeptide=Potri.001G018300.1.p locus=Potri.001G018300 ID=Potri.001G018300.1.v4.1 annot-version=v4.1 MELPPPFPRPPPPPPPQDQQHQKDLDFDSIRAIKVLGKGAMGTVFLVHNQETDSTAKNRFALKVVEKSTLHTKFDAERRARWEIQVLNQLSTPKTTHPFL PNLISSIETQEFLAWSVPFCPGGDLNVLRHRQNDHVFSPAVIRFYLAEIVCALDHLHQMGIVYRDLKPENILIQHSGHVTLTDFDLSRTLTRKTVRNLVP NAAASCNNLITVSEIEQEPQKKQQQHHIRNLTRWWFVNDVQHKKNGLKKAKSARVSPVSRRKLSFNNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL GILSFEMLYGTTPFVGKNRKETFRNVLAKKPEFIGKRNELTDLIERLLEKDPTQRLGYQRGACEIKEHVFFKGVRWDLLTEVLRPPFIPSRDDGELTERA TAAGVDIREYFKDLRAPPPSMPPSPSSDYYMKLSEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.001G018300 [exp]	0	1
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	2.44	0.7770
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	19.07	0.7139
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	19.77	0.6942
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	24.55	0.7127
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	29.58	0.7331
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187300 [exp]	29.66	0.5862
AT3G13290		VCR	varicose-related (.1)		Potri.006G001400 [exp]	31.36	0.7134
AT4G02110			transcription coactivators (.1...		Potri.014G122400 [exp]	31.67	0.6440
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	35.28	0.6950
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	35.32	0.6231	HMT1,SMTA.1

Compare expression of checked genes

Potri.001G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.