Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) AT2G36320 143 / 5e-44 A20/AN1-like zinc finger family protein (.1) AT4G12040 136 / 3e-41 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT3G52800 125 / 5e-37 A20/AN1-like zinc finger family protein (.1) AT1G12440 124 / 1e-36 A20/AN1-like zinc finger family protein (.1.2) AT2G27580 123 / 4e-36 A20/AN1-like zinc finger family protein (.1.2) AT4G22820 118 / 6e-34 A20/AN1-like zinc finger family protein (.1.2) AT3G12630 106 / 2e-29 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G14225 99 / 3e-27 A20/AN1-like zinc finger family protein (.1) AT4G25380 91 / 5e-24 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205500 [exp] 292 / 1e-102 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 233 / 2e-79 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 232 / 4e-79 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G115000 [exp] 139 / 2e-42 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 136 / 2e-41 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 134 / 1e-40 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 130 / 8e-39 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 126 / 3e-37 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.001G269400 [exp] 115 / 5e-33 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031833 [exp] 236 / 9e-81 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10031262 [exp] 221 / 2e-74 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10006671 [exp] 139 / 2e-42 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10007015 [exp] 138 / 7e-42 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10003246 [exp] 135 / 6e-41 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10008912 [exp] 131 / 6e-39 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 130 / 1e-38 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 113 / 7e-32 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10037702 [exp] 112 / 2e-31 AT3G12630 176 / 1e-56 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10020594 [exp] 107 / 6e-30 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [poplar] [flax] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G018600.2 pacid=42790224 polypeptide=Potri.001G018600.2.p locus=Potri.001G018600 ID=Potri.001G018600.2.v4.1 annot-version=v4.1 ATGGACCATGACGAGACAGGATGCCAAGCTCCTCCAGAAGGTCCTATTTTGTGTACTAACAATTGTGGCTTCTTTGGAAGTGCAGCTACTATGAACATGT GTTCAAAGTGCCACAAGGGTATGCTGTTAAAACAGGAGCAGGCTAATCTTGCTGCGTCATCTATTGGAAGTATTGTGAATGGATCATCAAGCAGCAATGT TTTTGAACCTGTTATTGCTGACATCATTGATGTCCAAAACAATGCAGTGGAGCCTAAGACCATCACTGTGCAGCCATCCTGTGCTTCAGGCTCAGGGGAG AGGGTTGAGGCAAAGCCGAAGGAGGGTCCAAACCGGTGCACCTCTTGCAAGAAAAGAGTTGGTTTAACAGGGTTCAAGTGTCGATGTGGTAGCCTCTTTT GTGCATCTCATCGCTACTCAGATAAACATGACTGCCCATTTGATTATCGTTCTGCTGCCCGTGAAGCAATAGCAAAAGCCAACCCTGTTGTCAAGGCAGA GAAGCTTGATAAAATCTAA
AA sequence Show only first row Show all	>Potri.001G018600.2 pacid=42790224 polypeptide=Potri.001G018600.2.p locus=Potri.001G018600 ID=Potri.001G018600.2.v4.1 annot-version=v4.1 MDHDETGCQAPPEGPILCTNNCGFFGSAATMNMCSKCHKGMLLKQEQANLAASSIGSIVNGSSSSNVFEPVIADIIDVQNNAVEPKTITVQPSCASGSGE RVEAKPKEGPNRCTSCKKRVGLTGFKCRCGSLFCASHRYSDKHDCPFDYRSAAREAIAKANPVVKAEKLDKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	0	1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	2.82	0.8006	RHC1.2
AT5G06240		EMB2735	embryo defective 2735 (.1)		Potri.016G074700 [exp]	3.60	0.8475
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.008G053800 [exp]	5.29	0.7920	Pt-UBC13.3
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	7.34	0.7779
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	8.12	0.7928
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	9.64	0.6854
AT1G07400			HSP20-like chaperones superfam...		Potri.006G073500 [exp]	10.00	0.7785
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.013G086400 [exp]	10.58	0.7670
AT4G29850			Eukaryotic protein of unknown ...		Potri.006G072000 [exp]	12.36	0.7221
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Potri.013G012500 [exp]	13.07	0.7597

Compare expression of checked genes

Potri.001G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.