Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 503 / 1e-175 ATNEK5 NIMA-related kinase 5 (.1) AT3G63280 439 / 1e-148 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G44200 427 / 3e-139 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G12200 408 / 3e-136 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G04810 403 / 5e-134 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G54510 399 / 4e-132 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT5G28290 397 / 5e-132 ATNEK3 NIMA-related kinase 3 (.1) AT1G50240 155 / 7e-40 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G07980 152 / 1e-38 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G53930 151 / 1e-38 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205400 [exp] 969 / 0 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 593 / 0 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 523 / 4e-180 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 432 / 5e-141 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 418 / 8e-140 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.009G020100 [exp] 429 / 1e-139 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.005G051600 [exp] 410 / 6e-136 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 398 / 9e-132 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.019G052500 [exp] 154 / 3e-39 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031834 [exp] 492 / 9e-171 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10040499 [exp] 482 / 2e-164 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 477 / 3e-158 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10013338 [exp] 425 / 3e-138 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 412 / 1e-137 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 411 / 4e-137 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001857 [exp] 422 / 5e-137 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10020244 [exp] 410 / 6e-137 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 382 / 1e-125 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 380 / 4e-125 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G018700.5 pacid=42791773 polypeptide=Potri.001G018700.5.p locus=Potri.001G018700 ID=Potri.001G018700.5.v4.1 annot-version=v4.1 ATGGAGACTAAGAACAAAGAAATGGTATCTAAGATGGACGATTATGAAGTTATAGAGCAAATTGGAAGAGGAACTTTTGGTGCTGCATTTCTTGTTCTTC ATAAATTTGAGAATAAGAGGTATGTATTGAAGAAGATTCGTTTGGCTAAACAAACAGAAAAGTTCAAGCAAACTGCTTATCAAGAGATGAATTTGATATC AAAGCTTAATAACCCATACATTGTGCAGTACAAAGATTCATGGGTGGAGAAGGAATCCTATGTATGCATTGTAACAAGTTATTGTGAGGGAGGAGACATG GCTCAAATGATTAAGAAAGCTAGAGGGACATATCTTCCTGAAGAGATGCTCTGCAGATGGCTGACGCAGCTGTTGCTTGCTTTGGACTATCTCCATTCCA ATCGTGTCTTGCACAGAGATTTGAAATGCTCCAACATATTCCTCGCGAAAGATGGCAACATCCAGCTAGGTGACTTTGGACTTGCAAAATTGTTGAACAA GGAGGATCTTGCATCCACGATTGTAGGCACTCCGAACTATATGTGTCCAGAACTTCTTGCAGACATACCTTATGGCTACAAATCGGACATTTGGTCTCTA GGTTGCTGCATGTTTGAGATTGCTGCACATCAACCTGCATTTAGAGCTTCTGATATGGCTGGACTGATTAACAAGATAAATCGCTCCTCCATTTCTCCAC TCCCAACTGCCTATTCCTCCACATTAAAACAATTGATCAAAACCATGCTGCGGAAGAGCCCAGAGCATAGACCAACAGCTGCAGAGTTGTTGAGGCACCC CCATCTACAACCATATCTTGCTCAATGCCAAAATCTATCTCCTGTTTTTCTCCCTGTGACGTCCGAATACAGCTGCACGGATAAACCAAGAGGAACCCGA TTACCTAACAAGTCTAGTGTTCACAAGAATGCCATAGCGTTGAAAGCAAGCCCATCAAAGGAGTGCAAATGTTTTAACCAGGAAAAAGTTGGTGCTTTTG CACAAAGAGTAGCAGCAAATGATTCGCCAAAAAGTGCAGAACAAACTGAAAAGGTCAACTCAGGAACCAGTTCAGCAAGTATTGCAAGGACTCACCATGA TGAAGAGAAACAAGAAATTGCTTCTGAGAAGTCACAAATAGTTCAAGAGAAGCTCTGTGGAGTTGGCCAAGCTGGCATGGAATGTAAAAGTGCTAGTTCA GGGAATAGCAAAAGAATGGAAAAGCTGTCTGCGGATTCAACAGGCTATGTTGGTCTTGCTGGTTACAAAAAGGCATCAGCATTGGCAATGGATGACCAAA CTAGACATGATCTTGAATTGGAACCCGAATTCTGCAAACCCCCAACAGTGACAGACATGAAATCAACACCAAGTAAATCGAAACCACCTCACGGAAACGG AGATAGACAAAAGGAATTGAATAGATCCCCTAGTGACATCTCATCAGTGAGTTCACTGACTTCTCTACATGGTGATGAAACAAAGATTAACTGGAATCCT CAGAGCCTGCAGAGAGCAGATGCTCTGGAATCACTACTAGAGATTTGTGCAACTTTGGTTAGACAGGAAAGGTACGAGGAGCTAGCAGGAGTACTAAGAC CTTTCAGTGAAGAAGCTGTATCATCAAGAGAAACAGCAATTTGGTTGACAAAGAGCCTTATGAAACTTCACAAAAAAGGCAATGGAGCAGCTCAGCAATG A
AA sequence Show only first row Show all	>Potri.001G018700.5 pacid=42791773 polypeptide=Potri.001G018700.5.p locus=Potri.001G018700 ID=Potri.001G018700.5.v4.1 annot-version=v4.1 METKNKEMVSKMDDYEVIEQIGRGTFGAAFLVLHKFENKRYVLKKIRLAKQTEKFKQTAYQEMNLISKLNNPYIVQYKDSWVEKESYVCIVTSYCEGGDM AQMIKKARGTYLPEEMLCRWLTQLLLALDYLHSNRVLHRDLKCSNIFLAKDGNIQLGDFGLAKLLNKEDLASTIVGTPNYMCPELLADIPYGYKSDIWSL GCCMFEIAAHQPAFRASDMAGLINKINRSSISPLPTAYSSTLKQLIKTMLRKSPEHRPTAAELLRHPHLQPYLAQCQNLSPVFLPVTSEYSCTDKPRGTR LPNKSSVHKNAIALKASPSKECKCFNQEKVGAFAQRVAANDSPKSAEQTEKVNSGTSSASIARTHHDEEKQEIASEKSQIVQEKLCGVGQAGMECKSASS GNSKRMEKLSADSTGYVGLAGYKKASALAMDDQTRHDLELEPEFCKPPTVTDMKSTPSKSKPPHGNGDRQKELNRSPSDISSVSSLTSLHGDETKINWNP QSLQRADALESLLEICATLVRQERYEELAGVLRPFSEEAVSSRETAIWLTKSLMKLHKKGNGAAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.001G018700 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.001G110300 [exp]	1.00	0.8954
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.002G052600 [exp]	3.60	0.8219
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	5.29	0.8483
					Potri.010G031700 [exp]	9.79	0.8263
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	10.39	0.8568
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	11.40	0.8238
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	12.24	0.8282	VLN1.1
AT4G13950		RALFL31	ralf-like 31 (.1)		Potri.017G059500 [exp]	12.96	0.8278
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	20.12	0.8388
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	26.53	0.7641

Compare expression of checked genes

Potri.001G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.