Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20870 436 / 3e-156 ZTP29 zinc transporter 29, ZIP metal ion transporter family (.1) AT3G08650 42 / 0.0005 ZIP metal ion transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205100 [exp] 464 / 2e-166 AT3G20870 454 / 2e-162 zinc transporter 29, ZIP metal ion transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031268 [exp] 439 / 2e-157 AT3G20870 466 / 4e-168 zinc transporter 29, ZIP metal ion transporter family (.1) Lus10031836 [exp] 375 / 2e-132 AT3G20870 402 / 2e-143 zinc transporter 29, ZIP metal ion transporter family (.1) Lus10035606 [exp] 41 / 0.001 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.001G018800.2 pacid=42793142 polypeptide=Potri.001G018800.2.p locus=Potri.001G018800 ID=Potri.001G018800.2.v4.1 annot-version=v4.1 ATGGATTCTCAAGTTATGGTAGCTTTGGCTCTCTCTCTTGTGGGTGGATTAAGCACTTCTATAGGTGCACTCTTTGTAATTCTTTTTCAGGCTCCCAATT TGAAGATGCTTGGACTATTACAGGGTTTTGCTGCAGGCCTGATGCTGAGCATATCATTCCTTGATCTTGCTCATAATGCTATCAACTCAATTGGGTTCTT AAAAGGCAACCTCTGGTTTTTTGGAGGTGTTGTATTCTTTGGCATCATTGCCAATTTTATCCCAGAGCCAACATTTGCCCCAAGTTCAGATGTTAAAAGT AAAAAGAAAAATGGCGACCAAGGGGGAAAGGACATAATGAAAAAGCATCGTCGTCAAGTTTTGTTCAGTGGAATTATCACTGCAATAGGAATAAGTTTGC ATAACTTTCCGGAGGGAATGGCAGTGTTCCTTGGATCAATTAAGGGCCTCCGTGTTGGTCTTAATTTGGCTCTGGCAATTGCTTTGCACAACATTCCAGA GGGTGTTGCTGTTGCACTTCCTATATATTTTGCAACGCAGAGCAAGTGGCAGGCATTCAAATTGGCGACAGTTTCTGGTTTTGCTGAGCCACTTGGTGTG GTGCTTGTCGCATATCTATTCCCAAGCAGCTTAAGTCCTGAAATTCTGGAGGGTTTGCTCGCATCAGTTGGTGGGGTGATGGCTTTCCTAACCTTGCATG AAATGCTGCCACTGGCATTTGATTATGCGGGTCAGAAACAAGCTGTCAAGGCTGTATTCTTTGGTATGGCTTTCATGTCGGCAAGCCTATATTTTCTTGA AATCAGCCTCCCTGAGGAGATGAGCTTGTAG
AA sequence Show only first row Show all	>Potri.001G018800.2 pacid=42793142 polypeptide=Potri.001G018800.2.p locus=Potri.001G018800 ID=Potri.001G018800.2.v4.1 annot-version=v4.1 MDSQVMVALALSLVGGLSTSIGALFVILFQAPNLKMLGLLQGFAAGLMLSISFLDLAHNAINSIGFLKGNLWFFGGVVFFGIIANFIPEPTFAPSSDVKS KKKNGDQGGKDIMKKHRRQVLFSGIITAIGISLHNFPEGMAVFLGSIKGLRVGLNLALAIALHNIPEGVAVALPIYFATQSKWQAFKLATVSGFAEPLGV VLVAYLFPSSLSPEILEGLLASVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFFGMAFMSASLYFLEISLPEEMSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	0	1
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	1.00	0.8784
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	3.46	0.8761
AT1G70150			zinc ion binding (.1)		Potri.010G037600 [exp]	3.74	0.8494
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	7.07	0.8466
					Potri.005G045300 [exp]	8.00	0.8489
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	8.24	0.8526
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	8.66	0.8309
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	10.09	0.8557	STGA1.2
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	12.64	0.8219
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	12.72	0.8496

Compare expression of checked genes

Potri.001G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.