Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51220 353 / 5e-122 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G20880 347 / 3e-118 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT3G57670 332 / 1e-112 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT1G13290 290 / 2e-97 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 281 / 3e-94 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G08290 281 / 2e-93 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G34370 101 / 2e-24 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 91 / 1e-20 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G66730 87 / 9e-19 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT5G03150 87 / 1e-18 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205000 [exp] 485 / 6e-174 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.016G052700 [exp] 379 / 6e-132 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G267900 [exp] 370 / 1e-128 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 363 / 4e-126 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.004G183900 [exp] 327 / 8e-112 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.009G143700 [exp] 323 / 7e-110 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.010G129000 [exp] 290 / 9e-98 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 282 / 1e-94 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 102 / 5e-24 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031838 [exp] 353 / 6e-121 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031271 [exp] 349 / 1e-119 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10004887 [exp] 312 / 3e-105 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10035044 [exp] 300 / 3e-101 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10020597 [exp] 301 / 2e-100 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10021700 [exp] 296 / 2e-99 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10029525 [exp] 294 / 5e-99 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10033454 [exp] 289 / 5e-97 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10039613 [exp] 288 / 1e-96 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10020923 [exp] 287 / 4e-96 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G018900.1 pacid=42787861 polypeptide=Potri.001G018900.1.p locus=Potri.001G018900 ID=Potri.001G018900.1.v4.1 annot-version=v4.1 ATGGCTGATCCATATTCCAATTACTTCAATGGATGGTACAACTTCAACCACCTCCACCATTTATCTGCCTCAGCATCTTCTTCCAATTCATCACTATATG CATCCCATGGATGCAATATGTACTCAGATAATAATATTATCTATGACAACTCTTTTATTCAGAGTCATTCCACGTCACCTCCTTCTCCTCCTCTCAGAGA AGCTCTTCCACTTCTTAGTTTAATTAGTCCAACAAGGCATCATGAAGATCAACGGGAGTACTCCTCATGTAGTGCCATGGAAGTGGACAAGAACAAGGAC AGAGAAGAAAGCCTATATGATGATAAAACTGTGACTGTGGCTCTACATTTAGGGCTACCTAGACTTGATTCTGCTGATTTGGTGTCTTCCACAGAGATCT CATCAGACAACGAAGAAGTAACTGTTGCTTCTGGCTATCAAACAAGCAGTCGTACTCTTAACAAGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCT GATTGGTCCTACACAGTTTTCATGCCCACTTTGCTTCAAGACCTTCAACCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAAG AAAGGCCCAGATTCTCTAAGAGGTACGCAGCCAACAGCAATGCTTAGGCTCCCTTGCTACTGCTGTGCAACAGGATGCATAAACAACATTGATCATCCAG GAGCAAAGCCTCTCAGAGATTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCTTTCCTGTGCAGAAAATGTGGCAAGGCATTTGC CGTGAAAGGTGATTGGAGAACCCACGAGAAGAATTGTGGCAAGCTTTGGTATTGTACTTGTGGATCCGATTTCAAGCACAAAAGATCCCTCAATGATCAC ATCAAGTCATTTGGACATGGCCATTCGACAAATGACATTGATTTTCTTCAAGAAAAAAATGTTAGAAAATAA
AA sequence Show only first row Show all	>Potri.001G018900.1 pacid=42787861 polypeptide=Potri.001G018900.1.p locus=Potri.001G018900 ID=Potri.001G018900.1.v4.1 annot-version=v4.1 MADPYSNYFNGWYNFNHLHHLSASASSSNSSLYASHGCNMYSDNNIIYDNSFIQSHSTSPPSPPLREALPLLSLISPTRHHEDQREYSSCSAMEVDKNKD REESLYDDKTVTVALHLGLPRLDSADLVSSTEISSDNEEVTVASGYQTSSRTLNKGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYK KGPDSLRGTQPTAMLRLPCYCCATGCINNIDHPGAKPLRDFRTLQTHYKRKHGIKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLNDH IKSFGHGHSTNDIDFLQEKNVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51220	C2H2ZnF	AtWIP5, WIP5	WIP domain protein 5 (.1)		Potri.001G018900 [exp]	0	1
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.009G021400 [exp]	2.82	0.6761
AT3G04900			Heavy metal transport/detoxifi...		Potri.009G126600 [exp]	48.74	0.4930
					Potri.014G100650 [exp]	51.42	0.5634
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	93.08	0.5013
					Potri.009G067901 [exp]	257.68	0.4809

Compare expression of checked genes

Potri.001G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.