Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 1044 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 821 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT5G21930 379 / 1e-116 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 360 / 5e-109 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 255 / 2e-71 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 247 / 8e-68 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 174 / 4e-46 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 167 / 3e-42 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT3G57330 118 / 7e-27 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G24520 96 / 5e-20 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125600 [exp] 1047 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 1042 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 998 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 823 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 808 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.018G047800 [exp] 378 / 2e-115 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 368 / 9e-112 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 355 / 3e-107 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G204801 [exp] 264 / 2e-82 AT1G63440 234 / 3e-72 heavy metal atpase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031273 [exp] 1478 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 993 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 767 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 761 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 734 / 0 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 345 / 2e-103 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 281 / 9e-81 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10025467 [exp] 264 / 4e-74 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 260 / 1e-72 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10009789 [exp] 179 / 4e-48 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G019100.1 pacid=42793497 polypeptide=Potri.001G019100.1.p locus=Potri.001G019100 ID=Potri.001G019100.1.v4.1 annot-version=v4.1 ATGGGCTCGGATGGTGAAATGAAAATCAATGGGAAAGCAGATGATGATCTGAAGGCACCTTTGCTGAAGCCGTCGGAGGATGTTGCAATTACTGTCTTCC CTGATAAAGGAGATAAGAAGGTCAGAACTGTTAAGTTCAAAATAGGGGAAATCAAGTGCACATCGTGCTCGACGTCTATAGAATCTATGTTGGGAGAGGT TCATGGGGTTGAAAGTGCTGTAATATCGCCCCTTGATGGCCGTGCTGCTATCACTTATGTGCCTGAGCTTGTTGATGTTAATAAAATCAAGGAAACTATA GAAGATGCTGGATTTCCTGTTGATGAATTTCCAGAGCATGATATAGAAGTATGCCGGCTTAGGATTAAAGGAATGATGTGCACCAGCTGCTCTGAGTCTG TTGAACGTGTCCTTCTAATGGCTGATGGAGTTAAAAAAGCAGTGGTGGGTCTAGCTCTTGAAGAAGCAAAGGTCCACTTTGACCCAAACCTCATTGATAC AGACGGCATTCTTGAAGCAGTACAAGATGCTGGCTTTGGAGCTGAGCTCATCAGTTCTGGGAATGACATGAACAAGGTGCACCTTAAAGTTGAAGGATTT AATTTTGCAGAAGATGGTAACATGATCCAATCCTGTCTTGAGTCCACACCAGGTGTGAATCATGTTGAAGTGGACCTAGCTGAACATAAGGTAACTGTTT GCTATGATCCAGATCTCATTGGCCCAAGATCTATTATACAGCGCATTGGAGATGCATCATCTGGTCCCAACATTTACCACGCAGAATTATATGTTCCTCC AAGACGAAGAGAAACAGAGCAACTACAAGAAGTTCGGATGTATAGAAACCAATTTTTGTTGTGTTGCCTTTTCTCTGTTCCAGTACTTGTATTCTCCATG GTACTCCCAATGCTTCATCCTTATGGTAACTGGTTAGAATACAGGATTCACAACATGCTCACAGTGGGGATGCTTCTCAGGTTGATCCTTTGTACACCAG TGCAGTTCATTGTTGGCCGAAGGTTTTATGTGGGATCATACCATGCTTTGAGGCGGAAATCTGCTAACATGGATGTTTTAGTTGCACTAGGCACTAATGC AGCTTACTTCTATTCTGTATACATGGTGATAAAAGCTATAACGTCAGATACATTTGAAGGGCAAGATTTCTTTGAGACTAGTGCCATGTTGATATCGTTT ATTCTTTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGCAAGACTTCAGATGCTTTAGCAAAGCTGACTGAACTCGCTCCTGATACAGCTCATTTGGTAA CAGTAGACAGTGATGGAAATGTTGTCTCAGAGATGGACATTAGTACTGAACTGATACAAAGGAATGACATGATTAAGATTGTTCCAGGGGAAAAGGTCCC TGTTGATGGGATTGTTATAGATGGTCAAAGCTATGTGAATGAGAGTATGATCACAGGGGAGGCAAGGCCCATTGCTAAAAGACCTGGAGACAAGGTGATT GGCGGGACCATGAATGAGAATGGGTGCTTACTGGTCAGGGCTACTCATGTTGGATCAGAAACTGCACTTTCCCAAATTGTTCAACTTGTTGAAGCTGCTC AGCTTTCCAGGGCCCCTGTTCAGAAACTAGCTGACCGAATCTCCAAGATTTTTGTTCCTACAGTTGTTATTGCAGCATTTATTACATGGCTGGGATGGTT TATACCTGGAGAAGCTGGTCTTTACCCAAAACATTGGATACCCAAAGCAATGGACAGATTTGAGCTTGCACTGCAGTTTGGTATTTCAGTACTGGTAGTT GCTTGCCCGTGTGCTCTGGGTCTGGCAACACCAACAGCAGTCATGGTTGCCACTGGAAAGGGTGCTTCTCAAGGTGTGCTCATCAAAGGCGGAAATGCAC TTCAAAAGGCACACAAGGTGAAAACGGTTGTCTTTGACAAGACAGGGACATTAACAGTTGGAAAACCAGAGGTAGTTAGTGCTGTGCTCTTTTCCAGTTT CTCAATGGAGGAATTTTGTGACATGGTTACTGCTGCAGAGGCAAACAGTGAACATCCAATAGCAAAAGCTGTGGTGAAGCATGCTAAGAGGCTGCGCCAG AAGATTGCTCCTAATGCAGAATATATTGCAGAGGTTAAGGACTTTGAAGTGCACACTGGAGCTGGGGTGAGTGGAAAAGTGGGTGACAGAAATGTTTTGG TTGGGAACAGGAGGCTCATGCAGTCTTGTAATGTCTCAGTTGGTTCTGAGGTTGAGAACTACATTCGAGAACATGAGCAGTTAGCTAGAACGTGTGTGCT AGTAGCCATAGACGGAGGGGTTGCTGGAGCTTTTGCTGTGACTGATCCAGTGAAGCCAGAGGCTGAGTGTGTCATATCTTTTCTTCGTTCCATGGGCATC TCAAGCATCATGGTGACTGGTGATAACTGGGCTACAGCAAGTGCCATTGCTAAGGAGGTTGGGATTGAGAAGGTGTTTGCTGAAACAGATCCATTAGGAA AGGCTGACAGGATTAAAGATTTACAGGGAAAAGGAATGACTGTAGCAATGGTGGGAGATGGAATAAACGACTCGCCAGCTCTAGTTGCAGCTGATGTTGG GATGGCAATTGGTGCCGGCACTGATGTGGCCATAGAAGCTGCTGATATAGTTCTCATCAAAAGCAACTTAGAAGACGTAGTTACAGCCATCGATTTATCA AGAAAAACCATGTCCCGGATACGGCTAAACTACGTATGGGCTCTTGGTTATAACATACTCGGCATGCCTATTGCTGCTGGTATCCTATACCCATTCACTG GAATTCGTTTGCCACCTTGGCTTGCTGGTGCTTGTATGGCTGCTTCATCACTTAGCGTGGTTTGTTCTTCTCTCATGCTGCAGTCTTATAAGAAGCCTTT GCGTGTTAGAGATAGAGCCTCTTGA
AA sequence Show only first row Show all	>Potri.001G019100.1 pacid=42793497 polypeptide=Potri.001G019100.1.p locus=Potri.001G019100 ID=Potri.001G019100.1.v4.1 annot-version=v4.1 MGSDGEMKINGKADDDLKAPLLKPSEDVAITVFPDKGDKKVRTVKFKIGEIKCTSCSTSIESMLGEVHGVESAVISPLDGRAAITYVPELVDVNKIKETI EDAGFPVDEFPEHDIEVCRLRIKGMMCTSCSESVERVLLMADGVKKAVVGLALEEAKVHFDPNLIDTDGILEAVQDAGFGAELISSGNDMNKVHLKVEGF NFAEDGNMIQSCLESTPGVNHVEVDLAEHKVTVCYDPDLIGPRSIIQRIGDASSGPNIYHAELYVPPRRRETEQLQEVRMYRNQFLLCCLFSVPVLVFSM VLPMLHPYGNWLEYRIHNMLTVGMLLRLILCTPVQFIVGRRFYVGSYHALRRKSANMDVLVALGTNAAYFYSVYMVIKAITSDTFEGQDFFETSAMLISF ILLGKYLEVVAKGKTSDALAKLTELAPDTAHLVTVDSDGNVVSEMDISTELIQRNDMIKIVPGEKVPVDGIVIDGQSYVNESMITGEARPIAKRPGDKVI GGTMNENGCLLVRATHVGSETALSQIVQLVEAAQLSRAPVQKLADRISKIFVPTVVIAAFITWLGWFIPGEAGLYPKHWIPKAMDRFELALQFGISVLVV ACPCALGLATPTAVMVATGKGASQGVLIKGGNALQKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSSFSMEEFCDMVTAAEANSEHPIAKAVVKHAKRLRQ KIAPNAEYIAEVKDFEVHTGAGVSGKVGDRNVLVGNRRLMQSCNVSVGSEVENYIREHEQLARTCVLVAIDGGVAGAFAVTDPVKPEAECVISFLRSMGI SSIMVTGDNWATASAIAKEVGIEKVFAETDPLGKADRIKDLQGKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSNLEDVVTAIDLS RKTMSRIRLNYVWALGYNILGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLMLQSYKKPLRVRDRAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	0	1
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	3.87	0.7847
AT1G71870			MATE efflux family protein (.1...		Potri.013G115600 [exp]	6.48	0.7637
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123700 [exp]	6.63	0.7620
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	8.48	0.7790	Pt-TDY1.1
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	12.72	0.7588
					Potri.006G016250 [exp]	13.78	0.6993
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	16.15	0.7489	Pt-APL3.2
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	19.07	0.7390
AT5G39450			F-box family protein (.1)		Potri.007G102000 [exp]	19.87	0.7600
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	20.78	0.7549

Compare expression of checked genes

Potri.001G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.