Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13490 580 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 557 / 0 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 516 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 344 / 9e-118 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 187 / 2e-56 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G26180 111 / 1e-27 Mitochondrial substrate carrier family protein (.1) AT3G55640 108 / 1e-26 Mitochondrial substrate carrier family protein (.1) AT2G37890 107 / 3e-26 Mitochondrial substrate carrier family protein (.1) AT1G14560 104 / 4e-25 Mitochondrial substrate carrier family protein (.1) AT3G53940 102 / 3e-24 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204600 [exp] 659 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.009G062200 [exp] 605 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 602 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.007G139100 [exp] 532 / 0 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 527 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 314 / 1e-105 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 193 / 1e-58 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 109 / 7e-27 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 107 / 4e-26 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019702 [exp] 580 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 578 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 573 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 570 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 559 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 551 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10039847 [exp] 501 / 8e-179 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10034658 [exp] 327 / 1e-110 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 317 / 6e-107 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 279 / 8e-94 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.001G019400.2 pacid=42792644 polypeptide=Potri.001G019400.2.p locus=Potri.001G019400 ID=Potri.001G019400.2.v4.1 annot-version=v4.1 ATGACTGATAGCCGCCAGCAACCATCTGTCATGCAAAAGATGGCAAGCCAGGCCCATCACAGTTCTAGCTTTTCCCAAGGCTTTCAGAGACCTGCTTTAC ACCAAAGGCAGTTTGCATATGGAAATTATTCCAATGCAGGATTCCAGTATGCGATGACAAGGGCATGCCAATCCACCCCTGATATGTCATTGATTGCATC ATCTACCTCACCAGTATTTGTCCAAGCCCCATCAGAGAAAGGCTTGGCTGGCTTTGCTATTGATTTTCTTATGGGTGGAGTTTCTGCAGCTGTGTCCAAA ACTGCTGCAGCTCCCATTGAGCGTGTGAAGCTCTTGATCCAAAACCAGGATGAGATGATCAAGACTGGTCGACTCTCTGAACCATATAAGGGAATTGGAG ATTGTTTCAGCAGAACAATGAAAGATGAGGGGATGGTGTCATTGTGGAGAGGAAACACTGTCAATGTCATCCGTTACTTCCCCACTCAGGCCCTGAACTT TGCATTCAAAGATTACTTTAAGAGGCTTTTCAACTTCAAGAAGGACCGTGATGGCTATTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGTGGTGCTGCT GGTGCCTCATCACTACTCTTTGTCTATTCTTTGGATTATGCCCGAACCCGTCTTACAAATGATTCCAAGGCTGCAAAGAAGGGAGGGGAGAGGCAATTCA ATGGCTTGGTTGATGTCTACAAGAAGACTATGCAATCAGATGGTATTGCTGGGCTTTACCGTGGATTTAACATTTCATGTGTTGGTATTATTGTGTACCG TGGTCTGTATTTTGGAATGTATGATTCTTTGAAGCCAGTCGTCCTAACTGGAAAGATGCAGGATAGCTTCTTTGCTAGCTTTGCTCTTGGTTGGGTCATC ACCAACGGTGCTGGACTTGGATCCTATCCAATTGACACTGTCCGCAGAAGAATGATGATGACATCTGGTGAAGCTGTTAAGTACAAGAGCTCCTTTGATG CATTCTCTCAGATCCTCAAGAACGAGGGTGCTAAATCCCTCTTCAAGGGTGCTGGTGCAAACATCCTCCGTGCTGTTGCTGGTGCTGGTGTGCTTGCCGG ATATGACAAGCTTCAGATGATTGTGTTTGGGAAGAAGTTTGGTTCTGGTGGGGCCTAA
AA sequence Show only first row Show all	>Potri.001G019400.2 pacid=42792644 polypeptide=Potri.001G019400.2.p locus=Potri.001G019400 ID=Potri.001G019400.2.v4.1 annot-version=v4.1 MTDSRQQPSVMQKMASQAHHSSSFSQGFQRPALHQRQFAYGNYSNAGFQYAMTRACQSTPDMSLIASSTSPVFVQAPSEKGLAGFAIDFLMGGVSAAVSK TAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFSRTMKDEGMVSLWRGNTVNVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAA GASSLLFVYSLDYARTRLTNDSKAAKKGGERQFNGLVDVYKKTMQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKMQDSFFASFALGWVI TNGAGLGSYPIDTVRRRMMMTSGEAVKYKSSFDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQMIVFGKKFGSGGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	0	1
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	1.73	0.9351
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	1.73	0.9635	UBQ1.1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.002G135300 [exp]	2.23	0.9335
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	4.69	0.9459	Pt-ADR12.2
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	5.47	0.9290	ADR12.3
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	9.64	0.9057
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	11.22	0.9163
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	11.83	0.9133
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	11.83	0.9208
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	12.72	0.9219

Compare expression of checked genes

Potri.001G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.