Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22410 790 / 0 SLO1 SLOW GROWTH 1 (.1) AT2G29760 518 / 1e-175 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 449 / 1e-148 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 427 / 7e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 414 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31430 402 / 1e-132 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 400 / 6e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 396 / 4e-127 unknown protein AT3G12770 383 / 1e-123 MEF22 mitochondrial editing factor 22 (.1) AT3G04750 382 / 1e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 540 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 532 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 509 / 7e-173 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 492 / 1e-165 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 480 / 9e-162 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G040100 [exp] 472 / 1e-157 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 445 / 1e-148 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 442 / 1e-144 AT3G22690 1050 / 0.0 unknown protein Potri.012G135600 [exp] 433 / 2e-144 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018223 [exp] 520 / 3e-176 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 516 / 6e-175 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 468 / 1e-157 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 456 / 5e-153 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 446 / 3e-149 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 436 / 2e-143 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 414 / 3e-135 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 412 / 4e-135 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031661 [exp] 402 / 3e-132 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 401 / 1e-131 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G019500.1 pacid=42788618 polypeptide=Potri.001G019500.1.p locus=Potri.001G019500 ID=Potri.001G019500.1.v4.1 annot-version=v4.1 ATGACAGTTTACTATGTAACCAAAGTAAGATCTCATCACTTCATCCCAAAGCCTCTCTTAAACCCCTTCTTCTCTTGTCTTTCTCTTCACTCACACTCTT TCTCTACTCACAAGTCAAACCCTACTTCATGGAACACAACACACACTTATGTTCTCTCAAACCCACTTCTTTCTTTACTAGAAAACTGCAAATCTTTCTC TCAATTGAAACAAATCCAAGCTCAAATGATCCTTACAGGGTTGATCTTAGATGGGTTTGCTTCAAGTCGCTTAATTTCGTTTTGTGCAATATCAGAATCA AGAAATCTTGATTATTGTATCAAAATTTTGAATAATTTACAAAACCCAAATGTGTTTTCTTGGAATGCAGTGATTAGAGGGTGCGTAGAGAGTGAAAATC CGCAAAAAGGTTTAGTCCTGTATAAAAGGATGCTGACTAGGGCTGGTTGTAGGCCTGATAACTATACTTATTCTTTTTTGTTTAAAGTTTGTGCTAATTT AGTGTTAAGTTATATGGGTTTTGAGATTCTTGGACAGGTATTGAAAATGGGTTTTGATAAGGATATGTATCTGTATAATGGGATCATACATATGTTGGTT TCGGTTGGAGAGTCGGGGTTGGCGCATAAGGTGTTTGATGAAGGTTGTGTGAGAGACTTGGTTTCTTGGAATTCATTGATTAATGGGTATGTAAGAAGGA GGCAGCCAAGGGAGGCAATGGGGATTTATCAACAAATGATAACGGAGCAAGTTAAGCCTGATGAGGTGACAATGATCGGTGTTGTATCCGCTTGTGCACA ATTAGAAAGTTTGAAACTCGGGAGAGAAATTCATCGGTATATTGAAGAAAGTGGATTGAATTTGAAAATTTCGCTTGTTAATGCCCTTATGGACATGTAT GTGAAATGTGGGGATCTTGAGGCGGGGAAAGTTTTGTTTGATAATATGAGAAAGAAGACAGTTGTTTCATGGACTACGATGATTGTTGGGTATGCGAAAA ATGGGCTTTTGGATATGGCTGGGAAGCTTTTTCATGATATGCCAGAGAAGAATGTTGTGGCATGGAATGCCATGATTGGAAGTTGTGTTCAAGCAAATCT TAGCTTTGAGGCTTTAGAATTGTTTCGTGAAATGCAATTGAGCAATATGAAACCTGATAAGGTGACCATGCTTCATTGCTTATCTGCTTGCTCACAACTT GGAGCACTTGATACTGGAATGTGGACTCACAACTATATTAAAAAGCACAATCTCTCTTTAGATGTTGCCTTAGGTACTGCATTAATTGACATGTATGCAA AATGTGGGAATATGACAAAGGCTCTTCAGGTTTTCAATGAGATGCCAAGAAGAAACTCTTTGACCTGGACAGCCATTATAGGTGGTTTGGCTCTTTATGG GAATGTAAATGATGCCATATTTTACTTCTCTAAGATGATTGATAGTGGATTGATGCCAGATGAAATCACCTTTCTTGGGGTCCTAACAGCTTGTTGTCAT GGAGGGTTAGTTGAAGAAGGTCGCAAGTATTTTGATCAAATGAAGTCCAGATTCAACCTGTCTCCCCAGCCTAAACACTATTCTTGCATGGTGAATCTTC TTGGTAGGGCTGGTTTGTTGGAGGAGGCTGAAGAGCTTATTAAAACAATGCCAATGGAAGCAGATGCTATGGTTTGGGGTGCGTTGTTCTTTGCTTGTGG AATACATAGGAATCTTCTAATTGGGGAAAGAGCAGCTTCAAAGCTTCTTGACTTGGATCCCCATGACAGCGGAATATACGTCTTGCTTGCAAATATGTAC AGGGAAGCTGGTAAGTGGGAGGAGGCTCAGAACATAAGAAAGATGATGATGGAAAGAGGAGTCGAGAAGACTCCTGGTTCTAGTTCAATTGAGGTGAATG GCATTATCAATGAATTTATTGTTAGAGATAAATCACATCCTCAATCTGAACAGATTTATGAATGTTTTAATCTGATTAACAAGACAATTGGAGTTTGCTA TGTCTGA
AA sequence Show only first row Show all	>Potri.001G019500.1 pacid=42788618 polypeptide=Potri.001G019500.1.p locus=Potri.001G019500 ID=Potri.001G019500.1.v4.1 annot-version=v4.1 MTVYYVTKVRSHHFIPKPLLNPFFSCLSLHSHSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISES RNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLV SVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEQVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMY VKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQLSNMKPDKVTMLHCLSACSQL GALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCH GGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMY REAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECFNLINKTIGVCYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	0	1
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	2.23	0.9322
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	6.32	0.9333
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	6.55	0.8979
AT3G22690			unknown protein		Potri.010G083700 [exp]	6.63	0.9122
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	7.48	0.9201
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	8.36	0.8814
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	8.77	0.9277
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	8.94	0.9152
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	10.09	0.9368
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	10.09	0.9319

Compare expression of checked genes

Potri.001G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.