Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 120 / 7e-33 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 120 / 2e-32 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 101 / 8e-26 bZIP ATBZIP24 basic leucine zipper 24 (.1.2) AT1G22070 42 / 0.0002 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204400 [exp] 313 / 2e-108 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G175200 [exp] 130 / 1e-36 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G134900 [exp] 118 / 9e-32 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G007100 [exp] 43 / 9e-05 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014121 [exp] 123 / 5e-34 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027847 [exp] 124 / 8e-34 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 124 / 2e-33 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 100 / 4e-26 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 87 / 3e-20 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019756 [exp] 77 / 7e-18 AT4G35040 79 / 4e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018662 [exp] 43 / 3e-05 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10007726 [exp] 42 / 8e-05 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10001347 [exp] 41 / 0.0003 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10024140 [exp] 41 / 0.0008 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.001G020200.1 pacid=42793539 polypeptide=Potri.001G020200.1.p locus=Potri.001G020200 ID=Potri.001G020200.1.v4.1 annot-version=v4.1 ATGAAAGATTATAACATGGATGATGGGGAGATAGAGCTTTCGGATCATGTTTTGTTACCGAATCCCGATTCATCTGGCAGTTTGCAGAGCTCTGCATCTG TGGATTCACTTCTTGATGAATTCTTGAAGAATACGAGAACATGTACTCACACTCACACTTGCAACCCCCTTGGCCCTGACATAACTCATACACATACATG CTACCACACACACACCCAAGTCATTACTTCTGAAGAAGATGATGACGTAAACAATAGAGAGCATTCCAATTCTAAAGTAAAAAGGCCAGCAGGAAATAGA GAAGCAGTTCGAAAGTACAGACAAAAAAAGAAGGCACATACTGCTTACTTAGAAGAGGAAGTGAAGAAATTGCGTATATCGAACCAGCAGCTGGTGAGGA AAATACAGCAGCAGGTAATTCTTGAAGCCGAGGTTTTGAGGCTAAGAAGCATATTGATGGGCCTGAGGGGAAAGATTGATACTGAATTGGGTGTGTTACC ATTCCAAAATCAGGGTGACGCTACTGCTGCTTTCAAGGATGGCAATTGTGGTGCGCAGTCTACTGGTGGGCCAATGAATCTACAGTGTCAGACAGATTTA CCGTGCTTCCATACTCAAGTAGTAGGTTCGTCTTCGCGGGTTAATATTGACGGAAATGACAAATTGATGGAATCATGGGAAGGGACTTGTCAGCCTGTGA TATTAAATTCTCAGGCTAACATGGATAATATGGCAACTACAGAAGGACACGCAATGGACATGGTGGAAGCCTTGATGTCATCTGCCTCTCAAGTTCAATA A
AA sequence Show only first row Show all	>Potri.001G020200.1 pacid=42793539 polypeptide=Potri.001G020200.1.p locus=Potri.001G020200 ID=Potri.001G020200.1.v4.1 annot-version=v4.1 MKDYNMDDGEIELSDHVLLPNPDSSGSLQSSASVDSLLDEFLKNTRTCTHTHTCNPLGPDITHTHTCYHTHTQVITSEEDDDVNNREHSNSKVKRPAGNR EAVRKYRQKKKAHTAYLEEEVKKLRISNQQLVRKIQQQVILEAEVLRLRSILMGLRGKIDTELGVLPFQNQGDATAAFKDGNCGAQSTGGPMNLQCQTDL PCFHTQVVGSSSRVNIDGNDKLMESWEGTCQPVILNSQANMDNMATTEGHAMDMVEALMSSASQVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.001G020200 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Potri.001G166900 [exp]	1.00	0.8681
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073300 [exp]	5.29	0.8417
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.007G064300 [exp]	5.65	0.8476	Pt-MLO8.2
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	5.91	0.8475
					Potri.001G107400 [exp]	7.87	0.7942
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.011G071700 [exp]	8.12	0.8257	HSFA4.1
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	8.83	0.8572
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021000 [exp]	10.09	0.8474
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.003G110700 [exp]	12.48	0.7967
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	15.42	0.8200	Pt-CYP711.2

Compare expression of checked genes

Potri.001G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.