Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 330 / 2e-104 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT5G12440 263 / 4e-78 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G21100 244 / 3e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 174 / 8e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 155 / 3e-40 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 119 / 8e-10 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G51530 61 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 44 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 43 / 0.0005 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204300 [exp] 1096 / 0 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 419 / 1e-136 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 380 / 3e-122 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 308 / 1e-94 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 302 / 3e-92 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 150 / 4e-38 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 148 / 1e-37 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 76 / 4e-15 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.001G196500 [exp] 43 / 0.0007 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039575 [exp] 488 / 3e-165 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 488 / 4e-165 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 333 / 1e-104 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 228 / 3e-69 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 228 / 1e-65 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 206 / 2e-59 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005023 [exp] 208 / 1e-58 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 205 / 6e-57 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 179 / 2e-48 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012333 [exp] 172 / 6e-46 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.001G020300.15 pacid=42791232 polypeptide=Potri.001G020300.15.p locus=Potri.001G020300 ID=Potri.001G020300.15.v4.1 annot-version=v4.1 ATGGATGGTTATGAAGCAACAAGAATAGTTTTCTCGAGAATCCAAAACCTAGACCCAGAAAATGCTTCAAAAATCATGGGTCTTCTTTTGATTCAGGACC ATGGTGAAAAGGAAATGATTAGGTTAGCTTTTGGACCAGAAGCACTTGTTCACTCAGTAATCCTTAAAGCGAGGAAAGAACTAGGACTTTGCTCTCCAAC AAACCCTTCTAAAAGTCCTTCGCCCCCTTCGCCTCTATATTCAAGCAACCCAATAACCATCTCTAGACAGAATTCATCTTCTTCAACTTCAAGACTTGGG TTTAACATCCCACCTTCACTTACTATCCCAAACCCTTCATCAAATTTTTCTTCTTCTTGGAGTGACCTTCCAAACCCTGATGACTTGATTAGTCCTAATG GTAGTTCACTCAATCCTGCTTCTGCTCCTTTCTATGCTAATGGAGTAAGAGGTGGAGGAGAGTCTGATTTGATGGATGAGTTTCAGCTCCAAGACCAGCT TTCATTCTTGAATGACAATTCAGCAAATCTTGGTCCAAAAAGCTCAGATCTTTTTTACTCTCAACTGGATGCTTTATCAAGTCCAACTGGTGCTAGTGAT TCTGTGATGTTTCCTTCTTACTGGGGTGGGTCTGTGCACAGAAGGAGCTGTTCTGTCAGTGATGTTTTGGGGTCTGAGGATCCAAATTCAGGCTTTGGGT GGAGACCTTGCCTTTACTTTGCTAGAGGGTACTGTAAGAATGGAAGTAACTGTAGGTTTGTTCACGGTGGGCTCGGAGAATCTGATGGTGCAGGTGTTGT TGTGGGTTCACCTAATGGTAACAACAAGATTGATATGATGGACCAGTGCCATGAGTTGCTTAGATCCAAGTCTGCTCAACAGCAAAGGTTAGCTGCTGCT TCTCAGCTCATGGGTGGCTCTGCTGCTTCTTTTCCTTACTCTCCTAAAAGCATGAACTTTCTTCTTCAACAACAGCAAAATGATAGCCAGAGGGCTGCTG CTGCTTTGATGATGGGGGAGGACATGCACAAATTTGCAAGATCTAGGCTTGATAGGAATGATTTGATTAATCCTGCTTCCAGGCAGATCTACTTGACTTT CCCTGCTGATAGCACTTTTAGAGAGGAAGATGTGTCAAATTACTTCAGTATTTATGGGCCAGTGCAAGATGTGAGGATTCCTTATCAGCAGAAGAGGATG TTTGGATTTGTTACCTTTTTGTATCCAGAGACCGTGAAGATAATATTGGCCAAAGGGAACCCTCATTTTGTTTGTGATGCAAGGGTGCTTGTTAAGCCTT ACAAAGAGAAAGGCAAAGTCCCAGACAAGTACAGGAAGCAACAGCAGCAACAAGTTGAGAGGGGTGAGTTCTCACCATGTGGTACTCCTACTGGCCTTGA TTCCAGAGATCCATTTGATCTCCAACTTGGTAAGCAATGCAAACAATCCAACAGTCGATGTCTGTTTTGCACTTTAGACATTGTTGCTCAGTCTTTGTAT CATTCTCTTTATTCAGGTGCAAGAATGTTTTACAACACACAAGACATGTTGTGGAGGAGGAAGCTAGAGGAGCAAGCTGATTTGCAGCAAGCCCTTGAGC TTCAAAGTAGAAGATTGATGAGTTTGCAGCTTCTTGATGTCAAGAAACATCATCATAGGGCTCTTTCCACTGGCAGCCCTGTCCCCTCCCCAACTCACTC TCCAAATATTTTCAATCAATCTCTTGCCTTTCCTCCACTCCACAGCAACACAGAAGTTCCACAAGAGAATTGTTCTAGCCCAATGCCAGCCATTTCAGTG GCTGCCCCAACTGAAAAACAGATATCAAATGCTAATTCTGGGAAAGAATGTACTAGCAGTGAAGAGAATGGCAGTGGTAAAGAGAGCTCCCATGGTGAAG ACAGCGATTTACAAGAAAGTTTGGAGCACAACCTCCCTGATAGTCCCTTTGCATCTCCTACCAAAGGCTCCGGGGACTACTACTCTGCCTTCATCCATGG AGTTCCTGACCTCTCCCATGAAAAGGATGCTAACATCCCGGCTTCATCTTCTGCTAACAATAGTTTGGTCACTACAAGTCTAATCTCTCCTAATTCTTCA CTAGAAATGGCATCCTTCAAGTCCTTCAATTGCCAAATGCCCAGGTTTTCATCCGGGCATGGAGCAATAGGGATGTATGCCAACACAGATGGACCTACCT GCCCTGTTGGAATTTAG
AA sequence Show only first row Show all	>Potri.001G020300.15 pacid=42791232 polypeptide=Potri.001G020300.15.p locus=Potri.001G020300 ID=Potri.001G020300.15.v4.1 annot-version=v4.1 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGLCSPTNPSKSPSPPSPLYSSNPITISRQNSSSSTSRLG FNIPPSLTIPNPSSNFSSSWSDLPNPDDLISPNGSSLNPASAPFYANGVRGGGESDLMDEFQLQDQLSFLNDNSANLGPKSSDLFYSQLDALSSPTGASD SVMFPSYWGGSVHRRSCSVSDVLGSEDPNSGFGWRPCLYFARGYCKNGSNCRFVHGGLGESDGAGVVVGSPNGNNKIDMMDQCHELLRSKSAQQQRLAAA SQLMGGSAASFPYSPKSMNFLLQQQQNDSQRAAAALMMGEDMHKFARSRLDRNDLINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRM FGFVTFLYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQQVERGEFSPCGTPTGLDSRDPFDLQLGKQCKQSNSRCLFCTLDIVAQSLY HSLYSGARMFYNTQDMLWRRKLEEQADLQQALELQSRRLMSLQLLDVKKHHHRALSTGSPVPSPTHSPNIFNQSLAFPPLHSNTEVPQENCSSPMPAISV AAPTEKQISNANSGKECTSSEENGSGKESSHGEDSDLQESLEHNLPDSPFASPTKGSGDYYSAFIHGVPDLSHEKDANIPASSSANNSLVTTSLISPNSS LEMASFKSFNCQMPRFSSGHGAIGMYANTDGPTCPVGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	0	1
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	1.00	0.8001
AT5G42470			unknown protein		Potri.005G240000 [exp]	2.64	0.7303
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	5.29	0.7762
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	6.32	0.7408
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	7.93	0.7182
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	8.12	0.7321
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	11.95	0.7050
AT2G30530			unknown protein		Potri.013G160100 [exp]	12.24	0.7160
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	13.19	0.6771
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	19.33	0.7155

Compare expression of checked genes

Potri.001G020300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.