Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03200 127 / 4e-32 Eukaryotic aspartyl protease family protein (.1) AT5G33340 125 / 1e-31 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 123 / 7e-31 Eukaryotic aspartyl protease family protein (.1) AT1G31450 117 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT1G01300 117 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT3G18490 116 / 4e-28 Eukaryotic aspartyl protease family protein (.1) AT2G35615 109 / 8e-26 Eukaryotic aspartyl protease family protein (.1) AT3G61820 107 / 5e-25 Eukaryotic aspartyl protease family protein (.1) AT3G25700 106 / 6e-25 Eukaryotic aspartyl protease family protein (.1.2) AT3G20015 106 / 1e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 155 / 2e-42 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 139 / 1e-36 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 139 / 1e-36 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 136 / 2e-35 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 135 / 5e-35 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 125 / 2e-31 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 125 / 6e-31 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 122 / 3e-30 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 120 / 2e-29 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020279 [exp] 160 / 3e-44 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 136 / 5e-35 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002610 [exp] 135 / 7e-35 AT5G33340 392 / 2e-133 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 127 / 5e-32 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 127 / 7e-32 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 124 / 5e-31 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 124 / 8e-31 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 120 / 1e-29 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10029913 [exp] 119 / 2e-29 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 119 / 3e-29 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G020400.1 pacid=42792581 polypeptide=Potri.001G020400.1.p locus=Potri.001G020400 ID=Potri.001G020400.1.v4.1 annot-version=v4.1 ATGATGCTGGGTTGCATTGCAACAATGCAACTTGATGGCTTAACCATGGATCTCATACACAAAGACTCCCCACAATCCCCTCTTTACCCTGGTAATCTTC CTCCTGGTGAGCAGATTCTACAGCCAGCTGCTTGCCCTTTTGCTGGGTTGCACCACCAAACCAGCATGATGTCAACAAATAAAGCTGTCATGAACAGGAT GATGAGTCCTCTCACTTCCTATGGTGACCCCTTTTTGTTCTTGGCACAAGTTGGTGTTGGCTCCTTCCAAGAAAAATCTCATCGTACACATTTCAAAACC TACTACTTTCAAATAGACACTGGTAATGAGCTCTCTTGGATTCAATGTGAAGGTTGCCAAAATAAAGGCAACGTGTGCTTCCCTCATAAGGATCCTCCAT ACCCCAGTTCTCAATCCAAATCTTACTATCCTGTATCTTGCAATCAACACTCCTTCTGCGAGCCAAACCAATGCAAAGAAGGCTTATGTGCCTATAATGT AACCTATGGTCCAGGTTCCTACACAAGCGGGAATCTTGCTAATGAAACTTTCACTTTCTATTCTAACCATGGCAAACACACAGCTCTCAAGAGCATTAGT TTTGGATGCAGCACCGATAGTAGAAACATGATATATGCTTTCTTGCTTGACAAAAATCCGGTGAGTGGGGTTTTGGGTATGGGATGGGGTCCTCGATCTT TTCTAGCACAATTAGGCTCAATCAGTCATGGAAAGTTCTCATATTGCATCACAGCAAACAACACACACAATACCTATTTAAGGTTTGGCAAACATGTTGT GAAATCAAAAAATTTACAAACTACAAAAATAATGCAAGTCAAGCCCTCTGCAGCTTATCATGTGAATTTGCTAGGCATAAGTGTTAATGGGGTGAAGCTC AACATCACCAAAACCGATCTTGCTGTGAGAAAAGATGGTAGCAGAGGATGCATCATAGATGCTGGTACCCTGGCCACATTACTTGTCAAACCTATTTTTG ATACACTACACACAGCTTTGGCAAATCATTTGTCGAGCAATCAAAACCTGAAGAGATGGGTCATTCACAAGTTGCACAAGGATCTTTGCTATGAACAATT ATCGGATGCCGGCCGCAAGAACCTTCCGGTTGTTACATTCCATTTGGAGAATGCTGACCTTGAAGTTAAACCTGAAGCCATCTTCTTGTTCCGTGAGTTC GAGGGAAAAAATGTTTTCTGCTTGTCAATGCTTTCTGATGATTCTAAGACCATAATTGGTGCTTATCAGCAAATGAAGCAAAAGTTTGTGTACGATACTA AAGCTCGAGTGCTGAGTTTTGGTCCAGAGGATTGTGAGAAAAATGGCTGA
AA sequence Show only first row Show all	>Potri.001G020400.1 pacid=42792581 polypeptide=Potri.001G020400.1.p locus=Potri.001G020400 ID=Potri.001G020400.1.v4.1 annot-version=v4.1 MMLGCIATMQLDGLTMDLIHKDSPQSPLYPGNLPPGEQILQPAACPFAGLHHQTSMMSTNKAVMNRMMSPLTSYGDPFLFLAQVGVGSFQEKSHRTHFKT YYFQIDTGNELSWIQCEGCQNKGNVCFPHKDPPYPSSQSKSYYPVSCNQHSFCEPNQCKEGLCAYNVTYGPGSYTSGNLANETFTFYSNHGKHTALKSIS FGCSTDSRNMIYAFLLDKNPVSGVLGMGWGPRSFLAQLGSISHGKFSYCITANNTHNTYLRFGKHVVKSKNLQTTKIMQVKPSAAYHVNLLGISVNGVKL NITKTDLAVRKDGSRGCIIDAGTLATLLVKPIFDTLHTALANHLSSNQNLKRWVIHKLHKDLCYEQLSDAGRKNLPVVTFHLENADLEVKPEAIFLFREF EGKNVFCLSMLSDDSKTIIGAYQQMKQKFVYDTKARVLSFGPEDCEKNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G020400 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G218101 [exp]	8.12	0.6486
					Potri.010G000901 [exp]	9.79	0.6148
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.001G397900 [exp]	18.02	0.5882
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.014G079300 [exp]	51.57	0.5980
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G135400 [exp]	56.94	0.5298
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.003G104600 [exp]	57.05	0.5590
					Potri.002G159350 [exp]	61.83	0.5736
AT1G79640			Protein kinase superfamily pro...		Potri.003G186700 [exp]	62.92	0.5478
AT5G20950			Glycosyl hydrolase family prot...		Potri.008G013700 [exp]	127.60	0.4826
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	154.89	0.4774

Compare expression of checked genes

Potri.001G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.