Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41560 1456 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 1443 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 1251 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 1246 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 1237 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G29900 902 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 886 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 868 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 764 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 744 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204000 [exp] 1852 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.016G043100 [exp] 1517 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 1511 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.007G055500 [exp] 1226 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 1225 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.006G072900 [exp] 897 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 894 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 884 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 862 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016366 [exp] 1646 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 1502 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1491 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 1445 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 1231 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10018687 [exp] 1229 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019300 [exp] 1156 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 1146 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10019758 [exp] 1117 / 0 AT2G41560 1007 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 892 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus PF12515 [poplar] [flax] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G020600.1 pacid=42789493 polypeptide=Potri.001G020600.1.p locus=Potri.001G020600 ID=Potri.001G020600.1.v4.1 annot-version=v4.1 ATGGAGAAATACTTGAAAGAAAACTTCGTAGTTGATGCAAAGAGACCCTCTGACGAGGCTTTAAGAAGATGGAGATCTGCTGTTTCCGTCGTCAGGAATC CTCGCCGGAGGTTTCGAATGGTTGCTGATCTTGCCAAAAGAGCTGAAGCTGAAAAGAAACGTCAAAATCTCCAGGAAAAGATACGGATAGCTCTTTATGT GAAAAAGGCAGCATTGCACTTCATCGAGGCTGCTAATCGAGTTGAGCACAAGCTCTCAGACAATGTCAGGCAAACTGGTTTCGGCATTGAGCCGGATGAA CTCGCAGCCATCGTTCGGTCCCAAGATAACAAGGCTTTGGAATCTCATGGGGGGGTTGAAGGATTGGCCAGAGAAGTCTCTGTGTCTTTGAATGATGGGG TTGTCTCAAGTGACATATCTATTAGGCAAAATATATATGGCCCTAACAAATATGCTGAGAAACCTGCCAGATCTTTATGGATGTTTGTTTGGGATGCTTT GCATGATTTGACATTAATTATTCTCATGGCATGTGCTGTGGTCTCTGTTGGTGTTGGTATTGCAACTGAAGGTTGGCCAAATGGAATGTATGATGGGGTG GGAATAGTACTTTGCATTTTGCTAGTAGTGATGGTCACTGCAATAAGTGATTACAGGCAGTCCTTGCAATTTAAGGTCTTGGATAAGGAGAAGAAAAATG TTACTGTTCAGGTTACCAGAGAAGGTAGAAGACAGAAGGTTTCTATCTTTGATTTGGTGGTTGGAGATGTTGTTCATCTATCAATTGGAGATGTGGTTCC TGCAGATGGCATTCTTATATCAGGCCACAGCTTATCAGTCGACGAATCCAGCTTGTCAGGTGAGAGTGAGCCGGTGAACATAAATGAAAAGAAGCCCTTT CTTCTATCAGGAACCAAAGTACAGGATGGGTCTGGTAAAATGCTGGTGACAGCGGTTGGTATGAGGACTGAATGGGGTAAGCTGATGGTTACTTTGAGCG AAGTCGGGGAAGATGAAACACCACTGCAAGTGAAGCTTAATGGGGTTGCAACTATTATTGGGAAAATTGGTTTGGCTTTTGCTGTCATGACATTTTTGGT TCTGATGGCACGGTTTCTAGTGGCCAAGGCACACAACCATGAGATCACAAAATGGTCTAGTGGGGATGCTCTGCAGCTTCTAAATTTCTTTGCCATTGCG GTCACCATAATTGTTGTCGCCGTTCCTGAAGGGCTTCCATTAGCAGTTACACTTAGTCTTGCATTTGCAATGAAGCAATTAATGAAAGATAGAGCACTAG TGAGGCATCTCTCTGCATGTGAAACAATGGGTTCTGCTTGTTGCATTTGCACAGATAAAACCGGAACATTGACTACAAATCATATGGTGGTGAACAAAAT ATGGATCTGTGAGAAAACAAAATCAATACAAACTAATGACAATAAAGATCTGTTGATGTCCTCTGTCTCTGAAGATGTGCATGGAATCCTTTTGCAATCT ATATTTCAGAACACAGGATCAGAGGTGACCAAGGGAAAAGATGGAAAGACTAACATTTTGGGGACGCCGACAGAGACAGCAATAGTAGAGTTTGGATTGC TTTTGGGAGGTGATTTTAAAACTCATCATATCGAATCTGAGATAGTGAAAGTCGAGCCCTTCAATTCAGAAAAGAAGAAGATGTCTGTGCTTGTTTCTCT TCCTGACAACAGTAGATTTCGAGCATTCTGCAAAGGTGCATCAGAAATAATTTTGAAAATGTGTGACAAGATTTTAACTGCTGATGGCAAATCTGTGCCA CTATCTGAAAATCAAAGACAGAACATCACAGATGTCATAAATGGTTTTGCCTGTGAAGCCCTACGAACTCTATGCTTCGCTTTCAAGGATATAGAGAAGA CTTCTGATGCAGATAGTATACCTGACAACAACTATACACTAATTGCTGTTGTTGGAATCAAGGATCCTGTACGCCCTGGGGTGAAGGAAGCTGTTAAGAC TTGCTTAGCTGCTGGAATCACCGTGCGGATGGTCACTGGTGACAATATCAACACTGCAAAAGCCATAGCTAAGGAATGTGGCATCTTGACAGATACTGGC CTGGCAATTGAAGGGCCAGATTTCCGCACTAAGAGTCCTCAGGAGTTGGAGGAAATAATACCAAAACTTCAGGTTATGGCGCGATCATCGCCTTTAGACA AACATAAATTAGTTACTCAATTGAGGAATGTATTTAAGGAAGTTGTGGCAGTGACTGGAGATGGTACTAATGATGCTCCAGCCTTGGCAGAGGCAGATAT TGGGCTTGCTATGGGTATAGCAGGAACAGAGGTAGCAAAAGAAAGTGCCGACGTTATTGTGATGGATGACAACTTTAAAACCATAGTGAATGTTGCAAGA TGGGGTCGAGCAGTTTATATCAACATTCAGAAGTTTGTTCAGTTCCAGTTAACGGTCAATGTTGTTGCCCTGATGATCAATTTTATTTCTGCATGCATCT CTGGCAATGCGCCATTGACCACTGTTCAGCTGCTTTGGGTGAACTTAATCATGGACACTCTTGGTGCATTAGCATTGGCTACAGAACCACCTCATGATGG ACTGATGAAAAGACCTCCAATAGGAAGGAATGTAAGCATAATCACCAAGACCATGTGGAGGAATATCATTGGACAAAGCATCTATCAAATAATTGTCCTT GTCATCCTCCAATTTGATGGGAAACATCTCCTGAAGCTTTCGGGTTCAGATGCTACTAAAATCCTGAATACATTCATATTCAATACCTTTGTTCTCTGCC AGGTGTTCAACGAAATAAACAGCCGAGATATGGAGAAGATAAATGTCTTCAAAGGCATCTTTAGTAGCTGGATTTTCTTGGCTGTCATGTTCTCCACGGT GGTTTTCCAGATTGTGATAGTTGAATTCTTGGGCACATTTGCTAATACTGTTCCATTAAGCTGGGAATTATGGCTGGCCAGTATCTTAATTGGAGCTGCA AGTTTAGTCATTGCTGTCATCCTGAAGTGCATTCCTGTTGAAACTAAGAAAGATGACAACACTGCCAAGCATCACGATGGTTATGAGCCTCTTCCTAGCG GTCCGGATTTGGCGTAG
AA sequence Show only first row Show all	>Potri.001G020600.1 pacid=42789493 polypeptide=Potri.001G020600.1.p locus=Potri.001G020600 ID=Potri.001G020600.1.v4.1 annot-version=v4.1 MEKYLKENFVVDAKRPSDEALRRWRSAVSVVRNPRRRFRMVADLAKRAEAEKKRQNLQEKIRIALYVKKAALHFIEAANRVEHKLSDNVRQTGFGIEPDE LAAIVRSQDNKALESHGGVEGLAREVSVSLNDGVVSSDISIRQNIYGPNKYAEKPARSLWMFVWDALHDLTLIILMACAVVSVGVGIATEGWPNGMYDGV GIVLCILLVVMVTAISDYRQSLQFKVLDKEKKNVTVQVTREGRRQKVSIFDLVVGDVVHLSIGDVVPADGILISGHSLSVDESSLSGESEPVNINEKKPF LLSGTKVQDGSGKMLVTAVGMRTEWGKLMVTLSEVGEDETPLQVKLNGVATIIGKIGLAFAVMTFLVLMARFLVAKAHNHEITKWSSGDALQLLNFFAIA VTIIVVAVPEGLPLAVTLSLAFAMKQLMKDRALVRHLSACETMGSACCICTDKTGTLTTNHMVVNKIWICEKTKSIQTNDNKDLLMSSVSEDVHGILLQS IFQNTGSEVTKGKDGKTNILGTPTETAIVEFGLLLGGDFKTHHIESEIVKVEPFNSEKKKMSVLVSLPDNSRFRAFCKGASEIILKMCDKILTADGKSVP LSENQRQNITDVINGFACEALRTLCFAFKDIEKTSDADSIPDNNYTLIAVVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTDTG LAIEGPDFRTKSPQELEEIIPKLQVMARSSPLDKHKLVTQLRNVFKEVVAVTGDGTNDAPALAEADIGLAMGIAGTEVAKESADVIVMDDNFKTIVNVAR WGRAVYINIQKFVQFQLTVNVVALMINFISACISGNAPLTTVQLLWVNLIMDTLGALALATEPPHDGLMKRPPIGRNVSIITKTMWRNIIGQSIYQIIVL VILQFDGKHLLKLSGSDATKILNTFIFNTFVLCQVFNEINSRDMEKINVFKGIFSSWIFLAVMFSTVVFQIVIVEFLGTFANTVPLSWELWLASILIGAA SLVIAVILKCIPVETKKDDNTAKHHDGYEPLPSGPDLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	0	1
					Potri.019G129700 [exp]	1.73	0.9050
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.001G004100 [exp]	3.74	0.8737	Pt-AGP13.2
AT5G25050			Major facilitator superfamily ...		Potri.018G017100 [exp]	6.63	0.8562
AT1G17030			unknown protein		Potri.004G062000 [exp]	7.14	0.8720
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	8.48	0.8286
					Potri.019G129150 [exp]	8.66	0.8520
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	9.53	0.8608
AT3G05725			Protein of unknown function (D...		Potri.005G019900 [exp]	10.39	0.8622
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	11.83	0.8650
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	17.20	0.8695

Compare expression of checked genes

Potri.001G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.