Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63440 801 / 0 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 756 / 0 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT1G75450 550 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 465 / 5e-160 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT5G21482 443 / 3e-151 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT2G19500 428 / 8e-146 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 426 / 1e-144 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT5G06580 44 / 0.0003 FAD-linked oxidases family protein (.1) AT3G47930 43 / 0.0005 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203600 [exp] 1001 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 803 / 0 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 800 / 0 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.005G232300 [exp] 545 / 0 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 545 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 463 / 5e-159 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 451 / 1e-154 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 385 / 2e-128 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 48 / 2e-05 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039574 [exp] 627 / 0 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 612 / 0 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 558 / 0 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10024289 [exp] 520 / 0 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 452 / 1e-154 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10018039 [exp] 419 / 2e-144 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 419 / 2e-143 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031046 [exp] 417 / 9e-143 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 412 / 2e-141 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031188 [exp] 386 / 4e-129 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.001G020900.1 pacid=42793697 polypeptide=Potri.001G020900.1.p locus=Potri.001G020900 ID=Potri.001G020900.1.v4.1 annot-version=v4.1 ATGAGATATCCACCTGTGAGTATCCTCAAGCAAACCAATATGCTTTTCGTAAGAAGCTTCTTGATTTTGTTCCTGAGCTGCATGACCATAACAATAAACC TTTGTTTTTCCAGCAACCCTTCTTCGTTGAGAACCCTCTCCGTTGACGGGCATTTCAGCTTTGATGAAGTTCACCATGCAGCCAAAGACTTCGGCAATAG GTTTCAGCTACTCCCTTTGGCAGTACTATATCCAAAGTCAGTTTCTGATATTGCCACTACGATAAGGCATATTTGGCAGATGGGTCCTGATTCAGAGCTG ACAGTTGCAGCTAGAGGCCACAGCCACTCACTCCAGGGTCAGGCACAAGCCCACCAAGGAGTTGTAATCAATATGGAATCACTCCAAGTTCATAAAATGC ATGTTTACAGTGGAAACTATCCATATGTGGATGCCTCTGGCGGTGAGTTGTGGATGGATATCCTGCGTGAATGCCTCAAGTATGGGTTAGCACCAAAATC ATGGACAGACTACTTACATTTAACTGTTGGCGGTACTTTGTCTAATGCTGGGGTTAGTGGGCAGGCGTTTCGGCATGGCCCTCAGATCAGTAATGTCAAT CAGCTGGAAGTTGTTACAGGAAAGGGAGAAGTATTAAATTGCTCGGAGAAGCAGAATAGTGACCTATTTCACGGCGTTCTTGGAGGACTTGGTCAGTTTG GCATCATAACACGGGCAAGAATATCCTTGGAACCAGCACCTGATATGGTGAAATGGATTAGAGTTCTCTACTCGGACTTCACGACATTTGTCACAGACCA AGAGCGTTTAATAGGTGCAGAAAGCACATTCGACTACATTGAAGGATTTGTGATAATTAACAGGACTTCTCTCCTGAATAACTGGAGGTCATCTTTCGAT CCTCAAGACCCAGTTCAAGCTAGCCAGTTTCAATCGGATGGAAGAACTCTATACTGCTTAGAATTGGCCAAATACTTCAACCGAGACAGGATAGATGCAC TAAATGAGGAAGTTGGGAATTTGTTGTCTCAACTAAGTTACATGGCATCAACACTTTTCCTAACAGAAGTTTCATACTTGGAATTCTTGGATAGAGTTCA TGTGTCTGAGGTCAAGCTACGGTCTAAGGGCTTGTGGGAAGTTCCGCATCCATGGCTCAATCTTCTTATCCCCAAAAGCAAAATAAACGATTTTGCGGAT GAAGTCTTTGGCAACATCCTAACAGACACGAGCAACGGTCCAATCCTTATCTACCCAGTTAACAAATCAAAATGGGACAACAGAACTTCTGCTGTTCTTC CAGAGGAAGATATTTTCTACTTAGTGGCTTTCCTTAACTCTGCAATGCCCTCGTCCATGGGAACTGATGGCTTAGAACATATCTTAACTCAGAATAAAAG AATTCTAGAATTTTGTGAAACAGCACGCCTTGGGATGAAGCAATATCTGCCCCACTACAATACACAGGGAGAATGGAGAGCCCACTTTGGCCCACGATGG GAGGTTTTTGCCCAGAGAAAATCTACTTACGACCCCCTGGCAATACTTGCTCCTGGCCAGAGAATATTTCAAAAGGGAATATCTTTCTCATGA
AA sequence Show only first row Show all	>Potri.001G020900.1 pacid=42793697 polypeptide=Potri.001G020900.1.p locus=Potri.001G020900 ID=Potri.001G020900.1.v4.1 annot-version=v4.1 MRYPPVSILKQTNMLFVRSFLILFLSCMTITINLCFSSNPSSLRTLSVDGHFSFDEVHHAAKDFGNRFQLLPLAVLYPKSVSDIATTIRHIWQMGPDSEL TVAARGHSHSLQGQAQAHQGVVINMESLQVHKMHVYSGNYPYVDASGGELWMDILRECLKYGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVN QLEVVTGKGEVLNCSEKQNSDLFHGVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFTTFVTDQERLIGAESTFDYIEGFVIINRTSLLNNWRSSFD PQDPVQASQFQSDGRTLYCLELAKYFNRDRIDALNEEVGNLLSQLSYMASTLFLTEVSYLEFLDRVHVSEVKLRSKGLWEVPHPWLNLLIPKSKINDFAD EVFGNILTDTSNGPILIYPVNKSKWDNRTSAVLPEEDIFYLVAFLNSAMPSSMGTDGLEHILTQNKRILEFCETARLGMKQYLPHYNTQGEWRAHFGPRW EVFAQRKSTYDPLAILAPGQRIFQKGISFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	0	1
AT4G01700			Chitinase family protein (.1)		Potri.014G111800 [exp]	2.00	0.8474	CHI2.1
AT2G40570			initiator tRNA phosphoribosyl ...		Potri.018G087300 [exp]	3.31	0.7402
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	4.24	0.8135
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	7.21	0.7751
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	8.00	0.7543
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	8.83	0.7838
AT1G59740			Major facilitator superfamily ...		Potri.003G000800 [exp]	13.41	0.7385
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.019G075500 [exp]	16.43	0.7426
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.011G058800 [exp]	16.58	0.7095	PtrcGrx_C9,GRX.1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G101600 [exp]	16.70	0.7529

Compare expression of checked genes

Potri.001G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.