Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13460 346 / 3e-115 IQD11 IQ-domain 11 (.1) AT5G03960 170 / 3e-48 IQD12 IQ-domain 12 (.1) AT3G59690 129 / 3e-32 IQD13 IQ-domain 13 (.1) AT2G43680 125 / 8e-31 IQD14 IQ-domain 14 (.1.2.3) AT5G03040 115 / 7e-28 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 111 / 2e-26 IQD3 IQ-domain 3 (.1) AT4G10640 106 / 7e-25 IQD16 IQ-domain 16 (.1) AT1G01110 103 / 2e-23 IQD18 IQ-domain 18 (.1.2) AT4G00820 99 / 4e-22 IQD17 IQ-domain 17 (.1) AT4G14750 96 / 3e-21 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 240 / 1e-74 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 207 / 8e-62 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.013G127200 [exp] 135 / 2e-34 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.019G095700 [exp] 125 / 4e-31 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.010G082600 [exp] 114 / 2e-27 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.001G448100 [exp] 114 / 3e-27 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.016G086300 [exp] 113 / 5e-27 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 110 / 5e-26 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.002G178500 [exp] 109 / 2e-25 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039573 [exp] 292 / 2e-94 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10005315 [exp] 291 / 5e-94 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10027059 [exp] 125 / 1e-30 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 124 / 2e-30 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10041419 [exp] 113 / 2e-27 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 113 / 3e-27 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 110 / 6e-26 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10012608 [exp] 107 / 1e-24 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10026486 [exp] 107 / 1e-24 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10010104 [exp] 106 / 2e-24 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.001G021000.1 pacid=42793070 polypeptide=Potri.001G021000.1.p locus=Potri.001G021000 ID=Potri.001G021000.1.v4.1 annot-version=v4.1 ATGGCTAAGAAGAGAAGCTGGTTCTATCGAGTGAGAAGGTTATTTACTTCTGACACACAGTCAAGACAAGAAAAGGAAAGGAGAAGAAAATGGATGTTTT TTGGAAAGTTTAAGGTCAAGAATAGATTGGCCTCCATTGCAGCTCCATCATCACCACTAAGAGAAGAAGCAGAGAAGGAGCAGAGCAAGCATGCTCTAAG TGTTGCTCTTGCCACTGCTGCTGCTGCTGAGGCAGCTGTTGTAGCTGCTCAGGCTGCGGCCGAGGTGGTTTTGCTCACTGGTGTTCCTCATTCTATCAAT GAATATGAGAAAGAAACCGACCATTTAGCCTTCGAAGTTCAAGGTGATGCCCCTCATTCCACTCATCAACATGCGAGGGGGATCAAAGAACTGGCTGCCA TCAAAATTCAAGCTACCTTTAGGGGTTACCTTGCAAGGAAAGCTTTGCGGGCGCTGAAGGGGATAGTGAAGCTTCAAGCAATTATCCGAGGGCGGAACGT GAGACGCCAAGCCATGACTACTCTAAAATGCTTGCAATCCATTGTAAATATCCAGTCACAAGTCTGTGCAAAAAGGATCCAAATGGTGGAAGGTGCTTGG ACCTGTAGTGAAAATAAACAGTTAGAAAATTTGAGTGACAAGATAATAAAGATGGATATGAATAGTGAAAGAAGATGGGATAGCAGCCTTCTGACAAAGG AAGAGGCAGTTGCCTCGTTTCTAAGCAAGAAAGAGGCCGCGATTAAGAGAGAACGGATAAGAGAATACTGGTTCAACCGCCGGAATTCAGCTGAATCGGA GCGAAGCAAGCCAAGTGGAAGGTGGAGGTACTGGTTAGATCAATGGGTGGATACTCAACTTGTTAAGAGTAAAGAGCTTGAAGATTTGGACTCAGTTTTA ACCTCAAATCCAAAGCCTGGAGTGGAATATAGAGGAAAGCAGATTAAACTGAGAGGTTTGCAGAGACTGTATCACCTTGACAGTGTAGATTCTCCCATTT CAGCTCCAAGAAAATCCTTCCATAGAAAGCAATGCTCGTTGGGAGAAGACAATTCCTTTTCTAGATCTCCTGTGGTTCCAACTTACATGGCAGCAACTGA ATCTGCCAAGGCAAAAACAAGATCAATGAGCTCACCAAAGCTAAGGCCAGGGAGTTTTGATGCTTACTCTGACAGCTATTCTCCATGTAAGAATAAGCTT TCTCTGATATCATCTACAACTACTGAAGTGCCGAGCAGTGCTAGGTACGGAAGGCCTAGTGCTTATCAGCAAAGGTCTCCAAGCTTGAAGGGCCTTCCGG GTCCGATAAAATGTAACCGGCCAACGTCGAAAGTTCTTAGCTTTGATTCAGATTGCTCATTAAAGACTTGGGATAAACAAAGTTCCTTTAGATGA
AA sequence Show only first row Show all	>Potri.001G021000.1 pacid=42793070 polypeptide=Potri.001G021000.1.p locus=Potri.001G021000 ID=Potri.001G021000.1.v4.1 annot-version=v4.1 MAKKRSWFYRVRRLFTSDTQSRQEKERRRKWMFFGKFKVKNRLASIAAPSSPLREEAEKEQSKHALSVALATAAAAEAAVVAAQAAAEVVLLTGVPHSIN EYEKETDHLAFEVQGDAPHSTHQHARGIKELAAIKIQATFRGYLARKALRALKGIVKLQAIIRGRNVRRQAMTTLKCLQSIVNIQSQVCAKRIQMVEGAW TCSENKQLENLSDKIIKMDMNSERRWDSSLLTKEEAVASFLSKKEAAIKRERIREYWFNRRNSAESERSKPSGRWRYWLDQWVDTQLVKSKELEDLDSVL TSNPKPGVEYRGKQIKLRGLQRLYHLDSVDSPISAPRKSFHRKQCSLGEDNSFSRSPVVPTYMAATESAKAKTRSMSSPKLRPGSFDAYSDSYSPCKNKL SLISSTTTEVPSSARYGRPSAYQQRSPSLKGLPGPIKCNRPTSKVLSFDSDCSLKTWDKQSSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	0	1
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	2.23	0.8178
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	2.82	0.7712
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	8.83	0.7825
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074700 [exp]	13.41	0.7059
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.015G100300 [exp]	15.00	0.7219
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.010G178200 [exp]	15.55	0.6981
AT5G67070		RALFL34	ralf-like 34 (.1)		Potri.007G044700 [exp]	19.13	0.7968
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	22.95	0.7024
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	26.19	0.7070
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.018G065400 [exp]	26.26	0.7456

Compare expression of checked genes

Potri.001G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.