Plant FIBer expression Database

Potri.001G021200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G021300
[exp]
41 / 6e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G021200.1 pacid=42789876 polypeptide=Potri.001G021200.1.p locus=Potri.001G021200 ID=Potri.001G021200.1.v4.1 annot-version=v4.1
ATGGCTTCTAAATTGCTTCTGTTTTTGCTTTTTAGTGCTCTAGTTTGCTCCACCAGTGCTAGGAAACTAGTAGATGGAAAGGGTTCTTTTGAGGACGAGA
AAACTTTTTTTCACGCCCCCAAGTTTGGTGGAGGCCTAGGCGGCGGTGATGGAGGTTGGTTAGGAGGTGGAGGATTAGGTGGTGGAACTGGATTTGGTGG
GGGTGCTGGTGGTGGGGCTGGAGGTGGATTAGGAGGCGGTGGTGGTGGTGGATTTGGAGGTGGTGGAGGAGGAGGAATTGGTGGGGGTGCCGGTAGCGGT
TTCGGTGGCGGGTTTGGAGCTGGTGGTGGCCTTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGGATTTGGAGGAGGAGGAGGTGGTG
GACTTGGTGGTGGAGCTGGTGGTGGGTTCGGTGGTGGTGCTGGTGGAGGACTTGGAGGTGGATGGCCTTAA
AA sequence
>Potri.001G021200.1 pacid=42789876 polypeptide=Potri.001G021200.1.p locus=Potri.001G021200 ID=Potri.001G021200.1.v4.1 annot-version=v4.1
MASKLLLFLLFSALVCSTSARKLVDGKGSFEDEKTFFHAPKFGGGLGGGDGGWLGGGGLGGGTGFGGGAGGGAGGGLGGGGGGGFGGGGGGGIGGGAGSG
FGGGFGAGGGLGGGGGGGGGGGGGGGFGGGGGGGLGGGAGGGFGGGAGGGLGGGWP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G021200
[exp]
0 1
AT2G36430 Plant protein of unknown funct... Potri.003G181600
[exp]
1.00 0.9875
AT2G46640 unknown protein Potri.014G102600
[exp]
1.41 0.9814
AT3G18010 HD WOX1 WUSCHEL related homeobox 1 (.1... Potri.015G039100
[exp]
5.00 0.9712
AT3G02500 unknown protein Potri.017G112600
[exp]
5.47 0.9670
AT5G44680 DNA glycosylase superfamily pr... Potri.001G074700
[exp]
6.00 0.9746
AT3G06120 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (... Potri.008G202900
[exp]
8.00 0.9716
AT3G57600 AP2_ERF DREB2F Integrase-type DNA-binding sup... Potri.016G053200
[exp]
10.67 0.9520 DREB2.3
AT3G22640 PAP85 cupin family protein (.1) Potri.006G002500
[exp]
11.48 0.9632
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221200
[exp]
13.96 0.9556
Potri.007G097700
[exp]
14.00 0.9593

Potri.001G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.