Plant FIBer expression Database

Potri.001G021500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78100 48 / 5e-06 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1)
AT1G22220 43 / 0.0001 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G021600
[exp]
386 / 5e-135 AT1G22220 45 / 2e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.003G203000
[exp]
337 / 1e-115 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.001G022100
[exp]
192 / 6e-59 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.001G021900
[exp]
183 / 2e-55 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.001G021801
[exp]
158 / 1e-45 ND /
Potri.001G022400
[exp]
144 / 2e-40 ND /
Potri.019G023500
[exp]
133 / 2e-36 ND /
Potri.003G203500
[exp]
100 / 9e-24 AT4G18380 49 / 2e-06 F-box family protein (.1.2)
Potri.001G022601
[exp]
52 / 8e-08 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041123
[exp]
44 / 0.0002 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1)
Lus10036451
[exp]
43 / 0.0002 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G021500.3 pacid=42789738 polypeptide=Potri.001G021500.3.p locus=Potri.001G021500 ID=Potri.001G021500.3.v4.1 annot-version=v4.1
ATGAAAATGCAGATTTCTTCTGACAGTAGTAACTTGGGTACAATGGAGAAACCTTTGAATCCCATATTTTGGAAAGAAATGTCTCTATCCAAATTGACCA
AGAAAGACTGTATTTCAGATGTCTCAGACAGATTCTTTCAATTACCGGATGAATTGATTGTAACCATCCTGACAAGAACTAAAGATGCCAAAACCCTTAT
TCGTTGCTTGTCAGTTTGCAAGCGCTTGCAATGCCTTGTCACCAAAGTTGACACAGTCTTCCTTGGATTCTCGTATCCGGGCGAGGCTGGTCAGTATCTC
CCATGCTGGAAATCACATTACCACATTCCGCAATCAACAATCCCTGCCCTCATGAAAGTGTTTGTTAATCTGAAAGCTCTTGAAATTAAGCTCTGCCTTT
GCCCTTCACTACTCCCTTGTTATTATGGAGTATCTCGCAGTTGTAGCTTCAAGTTCCTGCTGAAGTCTGTGGACATGAATGATAAAATGCACACTCATAT
GTGTACAGCCTTTGACATTGGGTCGTTGTTAAGTGCTGATGGGGAGATTTCTTTCCCTGAATCAAACATGATGTATATTGGAAACGTCAAGAGCTCTCTG
ATGTTGTCCTTTTTTCTTGTAATATTATGCCATCGGCCTAAAACGCTGAGAAGCATGGTGATTTTGAGTTCTGAGAGTTATGGGTCAGAAGGTAAGGCAC
AGTATAGATCAGAAGATAAGGAGGGGTATAGATCTGAAGGGAATGTGTTTATGGAATCTGAACAGGTCGCCAGGTTTCGTGCTTTGAGTTTGACGACAGG
AGTGGACGAGAGCTGGCTCAAAGATCCACAGAATTTGGTTTGTTGGCTTGAGAATCATGAGGAAAATAAGCATCAGCTTGCAGAGAAGTTGTGGCTTATT
CATAAATGGGAAGGAGAGAGATGCAACATGAATGAGTCAATTGTAAAGAAGAGCGACGTGGAGGAGTTGCTGCGTGCTTTCGATGAGGACATTGATGAAA
ACAATGAAAATGAAGATTTCTTCCGAATGTAG
AA sequence
>Potri.001G021500.3 pacid=42789738 polypeptide=Potri.001G021500.3.p locus=Potri.001G021500 ID=Potri.001G021500.3.v4.1 annot-version=v4.1
MKMQISSDSSNLGTMEKPLNPIFWKEMSLSKLTKKDCISDVSDRFFQLPDELIVTILTRTKDAKTLIRCLSVCKRLQCLVTKVDTVFLGFSYPGEAGQYL
PCWKSHYHIPQSTIPALMKVFVNLKALEIKLCLCPSLLPCYYGVSRSCSFKFLLKSVDMNDKMHTHMCTAFDIGSLLSADGEISFPESNMMYIGNVKSSL
MLSFFLVILCHRPKTLRSMVILSSESYGSEGKAQYRSEDKEGYRSEGNVFMESEQVARFRALSLTTGVDESWLKDPQNLVCWLENHEENKHQLAEKLWLI
HKWEGERCNMNESIVKKSDVEELLRAFDEDIDENNENEDFFRM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78100 AUF1 auxin up-regulated f-box prote... Potri.001G021500
[exp]
0 1
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.019G075900
[exp]
1.41 0.8616
AT2G40650 PRP38 family protein (.1) Potri.005G021600
[exp]
3.46 0.8485
AT2G47310 flowering time control protein... Potri.002G192900
[exp]
3.87 0.8460 FCA.3
AT3G23780 NRPE2, DMS2, DR... DEFECTIVE IN MERISTEM SILENCIN... Potri.006G263900
[exp]
4.89 0.8034
AT3G16785 PLDZ1, PLDZETA1... PHOSPHOLIPASE D ZETA1, PHOSPHO... Potri.008G211100
[exp]
7.74 0.8436 PLDP1.1
AT4G19600 CYCT1;4 Cyclin family protein (.1) Potri.010G090400
[exp]
8.71 0.8212
AT1G60200 splicing factor PWI domain-con... Potri.008G147100
[exp]
10.58 0.8240
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.003G048900
[exp]
12.40 0.8342
AT5G40820 ATATR, ATRAD3, ... ARABIDOPSIS THALIANA ATAXIA TE... Potri.004G179000
[exp]
14.96 0.8415
AT2G34930 disease resistance family prot... Potri.012G034600
[exp]
16.61 0.8118

Potri.001G021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.