Plant FIBer expression Database

Potri.001G021900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G22220 45 / 4e-05 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G022100
[exp]
600 / 0 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.001G021801
[exp]
376 / 2e-131 ND /
Potri.019G023500
[exp]
197 / 2e-61 ND /
Potri.001G022400
[exp]
196 / 8e-61 ND /
Potri.001G021500
[exp]
194 / 1e-59 AT1G78100 48 / 6e-06 auxin up-regulated f-box protein 1, F-box family protein (.1)
Potri.001G021600
[exp]
189 / 2e-58 AT1G22220 45 / 2e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.003G203000
[exp]
184 / 3e-56 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1)
Potri.003G203500
[exp]
140 / 3e-39 AT4G18380 49 / 2e-06 F-box family protein (.1.2)
Potri.001G022150
[exp]
71 / 6e-15 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041123
[exp]
45 / 5e-05 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1)
Lus10036451
[exp]
44 / 0.0001 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.001G021900.1 pacid=42790191 polypeptide=Potri.001G021900.1.p locus=Potri.001G021900 ID=Potri.001G021900.1.v4.1 annot-version=v4.1
ATGAAGAGATCCAAATCAACCCAACAAAGCCAAAATCAACTTTTCCCGTTGAGGAGATCAGCAAGATTAGCAGACAAATTTCAGAAGTTACCTGATGAAT
TGACCATCAAAATCTTTTCAAAAATGGAAGATGACCCCAAAACCCTCATTCGATGCTCAGCTGTCAGCAAGACTTGGTCTTCCTTTGTCTCCAAAACTGT
TAATCTCACCCTGAGATTCTTGAGTACAGGTGAGAAGGGTCATTCACTTCCATGCTCAAAACGGCACCACCACATTCCATTACCTGCAATCCCTGCTATA
ATGAAGGTGTTTGCAAATCTGGAATCTCTCAAAATTAAGCTCTGTCGTTTCCCTTCTCCAACTGCACAACCTTGTTGTCAAAACTTCACCAAGATGAAGG
TTGATTGGGAGGGTGATGATTATCATACTTATACGTGCACGGCGTATGAGGTTGGATTGTTATCAACTATCAAAGGAGCTATGCTGTTTCATGATTTCAG
CAAAAGCACTTTTGCTGCCATCCAAGGTTTCCCAGTCACCTACTTTTATTGGAGAATGTTAGATCACCGGCCAAAAACACTGAGAAGAATGGTGATTATG
AGTTCAAAGATGGAAGGGTTTAGATCAGGAGGGAAGGTTTTTATGAGATACGAACAGCTCCCCAATTTGCGTGATTCAGTTTCGAATTTAAGAGTGAACG
AGAGATGGCTTGAAGATCCACAGAATGTGGTTCACTGGCACAAGAATCACTCGGACAAGGAGCATTTTCTGCAAGAACAGGTGTGGCTTCTTTATGAATG
GCAATATTTTGTAACTAACAGAGAACTTGATATGAAAGAAATGATGGTGAAGGAGACAGGTTATACAGAGCTGTTGGATGGATTAGATTATGATGGTGGT
GGTGATCATATTAGAAAACACTGA
AA sequence
>Potri.001G021900.1 pacid=42790191 polypeptide=Potri.001G021900.1.p locus=Potri.001G021900 ID=Potri.001G021900.1.v4.1 annot-version=v4.1
MKRSKSTQQSQNQLFPLRRSARLADKFQKLPDELTIKIFSKMEDDPKTLIRCSAVSKTWSSFVSKTVNLTLRFLSTGEKGHSLPCSKRHHHIPLPAIPAI
MKVFANLESLKIKLCRFPSPTAQPCCQNFTKMKVDWEGDDYHTYTCTAYEVGLLSTIKGAMLFHDFSKSTFAAIQGFPVTYFYWRMLDHRPKTLRRMVIM
SSKMEGFRSGGKVFMRYEQLPNLRDSVSNLRVNERWLEDPQNVVHWHKNHSDKEHFLQEQVWLLYEWQYFVTNRELDMKEMMVKETGYTELLDGLDYDGG
GDHIRKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G22220 AUF2 auxin up-regulated f-box prote... Potri.001G021900
[exp]
0 1
AT2G27940 RING/U-box superfamily protein... Potri.010G245801
[exp]
3.16 0.7142
AT1G61566 RALFL9 ralf-like 9 (.1) Potri.018G007600
[exp]
5.09 0.6418
AT4G02550 unknown protein Potri.006G191850
[exp]
6.48 0.7388
AT3G49030 FBD, F-box and Leucine Rich Re... Potri.011G024300
[exp]
8.94 0.6070
AT1G79680 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-L... Potri.018G148564
[exp]
20.24 0.6051
AT4G16295 SPH1 S-protein homologue 1 (.1) Potri.004G199700
[exp]
21.63 0.6076
AT1G79400 ATCHX2 cation/H+ exchanger 2, cation/... Potri.003G194200
[exp]
22.36 0.6790 Pt-ATCHX1.1
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Potri.016G036800
[exp]
24.49 0.5988
Potri.010G154250
[exp]
35.24 0.5816
AT1G12240 ATBETAFRUCT4, V... VACUOLAR INVERTASE, Glycosyl h... Potri.003G126300
[exp]
38.57 0.6420

Potri.001G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.