Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ABI8.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08550 749 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT3G57200 643 / 0 unknown protein AT2G41451 608 / 0 unknown protein AT3G61030 119 / 1e-28 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 118 / 5e-28 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202900 [exp] 933 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.016G041900 [exp] 706 / 0 AT3G57200 744 / 0.0 unknown protein Potri.006G045500 [exp] 638 / 0 AT3G57200 646 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039569 [exp] 796 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 689 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10018036 [exp] 676 / 0 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 638 / 0 AT3G57200 681 / 0.0 unknown protein Lus10000243 [exp] 263 / 9e-86 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 109 / 5e-28 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01697 [poplar] [flax] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Potri.001G022700.1 pacid=42792886 polypeptide=Potri.001G022700.1.p locus=Potri.001G022700 ID=Potri.001G022700.1.v4.1 annot-version=v4.1 ATGCCCAGCCACCACCTCCACGCTCCCCTCCGCTCCTCCACCGCTACCTCAACCACCATATCCACTCAATCCTTCACCTCAAGACTAATCCTCCTCCTAA CTCTCCTCCCTCTTTCTCTTGCAGCCTTAGCTTTTATCCTCCAATGGAAAGGCAATTCTGGCTTCATGATGGATCCCACAACAGCCAACTCTCGTTGGGC CCCACAAGGGTCTCACATTAAAAACCATGAGATCTTCCCTGGCATGGAATTATCTGTTTTATCGCCTAAAGCTCACAAATCATCTGACTGTTCTAGTCTT GGACGTAGTGGGGCACCTTCTTTTCCTTATTTTCGTGATTGGAAGTTTGATTTTCAAGCTAATTTGAGGCCTAAGATATGTATCACAACAAGTACTTCAG CTGGTTTGGATCAGATTCTACCGTGGATGTTTTATCATAAGGTTATGGGGGTGACAACCTTTTTCCTTTTCGTGGAAGGGAATGCAGCGTCTCCTAACAC GTCTAAAGTTTTGGAGTCCATTCCTGGAGTAAAATTGATTTATAGAACAACAGAGCTAGAGGAGCAACAGGCTAAAAGTCGGATATGGAATGAGACATGG CTGTCCAGTTTCTTTTACAAACCATGCAATTATGAGCTGTTTGTGAAGCAATCTCTCAACATGGAAATGGCAATTGTCATGGCAAGGGATGCAGGAATGG ACTGGATACTTCATCTTGACACTGATGAACTGATTCACCCTGCTGGTGCCCGTGAATATTCTTTGAGGCAGTTGCTGCTTGATGTTCCTGGAAATGTGGA TATGGTTGTGTTTCCAAATTATGAGAGCAGTATTGAACGAGATGATATTGAGGATCCTTTTGGTGAGGTGTCGATGTTCAAGAAGAATTATGACCATCTC CCAAAGGATACGTACTTTGGAATGTACAAGGAATCTACTCGTGGCAATCCAAATTATTTCTTAACTTATGGAAATGGGAAGTCAGCTGCTCGAGTTCAAG ATCATCTACGTCCTAATGGCGCACACAGATGGCACAACTATATGAAAACCCCAAATGAGGTGAAATTGGAAGAGGCTGCTGTTCTACATTACACGTATTC CAAATTTTCTGACTTGACTTCTAGACGTGATCGGTGTGGCTGCAAGCCTACAAAGGAGGATGTCAAAAGATGCTTTATGTTGGATTTTGACAGATCTGCA TTCATAATTGCATCAACTGCAACCGAGGAGGAAATGCGAAACTGGTATCGTGAACATGTCGTATGGGGTGACAAAGACTTGAAATTGAAGCTCCTGAGGA AGAGCATTTTAACTCGCATATATTCTCCTATGGCCATAATTCAGGGCTTAAGAGAGTCGGGTGTCTTCAGCTCTGTTATTCAATCTGCCCCAACAACACT TTCACGAGACAAGTTTCTAGCATCTGTCGATAGTAGTAACTCGTCAAGAACAGTTGCCTCCGAATCAATGCAGTCAAGAAAGACCATCAAAAGTAGAGAG AATCAAGCAACAGCTAGGAAGGTTTTGGGTTTAGAAACTACTGTGGTATCTCATGAAGCAGCTGTTCCACCACTTTCTCCTCCAGGATTGCTTGTGGAAG CATGA
AA sequence Show only first row Show all	>Potri.001G022700.1 pacid=42792886 polypeptide=Potri.001G022700.1.p locus=Potri.001G022700 ID=Potri.001G022700.1.v4.1 annot-version=v4.1 MPSHHLHAPLRSSTATSTTISTQSFTSRLILLLTLLPLSLAALAFILQWKGNSGFMMDPTTANSRWAPQGSHIKNHEIFPGMELSVLSPKAHKSSDCSSL GRSGAPSFPYFRDWKFDFQANLRPKICITTSTSAGLDQILPWMFYHKVMGVTTFFLFVEGNAASPNTSKVLESIPGVKLIYRTTELEEQQAKSRIWNETW LSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVVFPNYESSIERDDIEDPFGEVSMFKKNYDHL PKDTYFGMYKESTRGNPNYFLTYGNGKSAARVQDHLRPNGAHRWHNYMKTPNEVKLEEAAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSA FIIASTATEEEMRNWYREHVVWGDKDLKLKLLRKSILTRIYSPMAIIQGLRESGVFSSVIQSAPTTLSRDKFLASVDSSNSSRTVASESMQSRKTIKSRE NQATARKVLGLETTVVSHEAAVPPLSPPGLLVEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.001G022700 [exp]	0	1	ABI8.2
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	1.41	0.9548
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	5.09	0.9478
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	5.65	0.9467
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	6.00	0.9470
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	9.74	0.9370
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.011G088100 [exp]	10.81	0.9441
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	10.95	0.9456
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	11.31	0.9398
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	13.56	0.9254
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	13.60	0.9457

Compare expression of checked genes

Potri.001G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.