Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 168 / 8e-44 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 144 / 8e-36 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G25510 79 / 6e-15 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 61 / 3e-09 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G66910 50 / 5e-06 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G44630 50 / 6e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 49 / 8e-06 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 48 / 2e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G66900 48 / 3e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G44510 47 / 4e-05 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196100 [exp] 387 / 2e-119 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 310 / 4e-92 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 306 / 1e-90 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 250 / 3e-71 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 217 / 6e-60 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 216 / 9e-60 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 214 / 8e-59 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 207 / 2e-56 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 204 / 6e-56 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 295 / 8e-87 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 273 / 6e-79 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 235 / 7e-66 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 201 / 2e-54 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 189 / 1e-50 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 184 / 9e-49 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 177 / 2e-46 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 158 / 3e-40 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039548 [exp] 143 / 4e-37 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 106 / 4e-24 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G022800.2 pacid=42792274 polypeptide=Potri.001G022800.2.p locus=Potri.001G022800 ID=Potri.001G022800.2.v4.1 annot-version=v4.1 ATGCCATTAGGAATTAAAAATCTTAAGCGTCTTCGCAAACTGTATGATTCTGTTGTCAGCAGGAAAATTGGGCATGGGATAGAGGAGCTAATGGATTTAA ACTTTCTCTGTGGAACGCTTTGCATTTCAAGGTTAGAGAATGTGGTTGATCATCGGAGAGCAAGGCAGGCCAATTTACCGGAGAAGCAGGATCTAGAAGC TTTGGTGCTGAAATGGAGTTCTGATATCACCGATTCAAGAAATGAAAGGATTGAAAATGATGTATTAGACATGCTGCAACCTCATCAGGGGCTGAAAGAG CTGACAATCAACTCTTATTCTTCCACAGAGTTTCCATCTTGGGTTGGAGATCCTTCCTTCTCTAACATGGTGCTTCTAAGTTTGGAGAATTGTGAAAACT GCACATCCGTGCCAGCTCTTGGGCTTTTAAAATCGCTCAAGGACCTTTCCATCACTGGGATGAGTGGACTGCAGAGCATAGGTCGTGAGATTTACGGGGA ATGCTGCTCAAATCCTTTTCCTTCACTGGAGACTCTTTATTTCAAAGACATGCCTGGATGGAACTACTGGCATGCCAACGGCGAAGAACAAGTTGAAGTT TTCCCTCGCCTGCATAAGCTTTCTCTCTTGAATTGTTCTCGGGTATTGGGAAGATTGCTATATTATCTTCCTTCATTGAAAGAGCTAGTTATTTGTGAAT CCAAGTGCTTGTCGGTTTCTATTTCAAGTTTTCCGATGCTCCGTAATTTAGATGTTGATGGATGCAAGGAATTAATCTGCAGAAGCACGACTCAGTTTAG CTCACTCAACTCCGTGGTTCTTTCATGCATTTCAAATTTCAGTTTTCTAACTTTGGGCTTCATGCAAGGGTTGGCAGAATTTAAGAATTTAAAGATTACT GGTTGCCAGGAGATCACAGATTTTTGGCAAAATGGAGAGGAAGGACAAGAGCTGAAACTCGGCTTGCCTTGCTCTCTTGAAATGCTGAAGTTAATTGATT GCGAAAGCCTTCAGCAACCATTAATTTTGCATGGTCTCAGATCCCTTGAAGAGCTACATATTGAAAAGTGTGCAGGGCTGGTTTCCTTTGTTCAAACCAC TTTGCCTTGCACTCTTAAAAGGCTATGCATCAGTTACTGTGATAATTTGCAGTATTTGCTGGAGGAGGAAAAGGATGCCAACATTAGCAGCACATCTCTT CTTGAGTACTTGGATATCAGGAATTACTGTCCAGAACTGGGTTCAATAGCTGAGACATTTTGCTACATGTCTCCTGAACAAATCGAGATCAAATATTGTG GAAAACTCGCTTGCTTACCTGAGGGTCTGAACATGCTCAGTCATCTTCAGGAGAACACTATATGTAACTGTTCAAGTATACTTTCGTTCCCTGAAGGAGG GTTTCCTGCCACCAGTCTGCGAAAGCTCTACATGGGCTGGTGCGAGAAGCTCAAGGCTCTGCCGGAAAGATTGCGAAGTCTCACCTCTCTTGTAGAGTTG GATATTCATACACGCCCGAGCTTTGTGTCTTTCCCACAAGAGGGTTTCCCAACAAACTTGACATCACTTCTGATCACAAATCTCAACTTCTGTAAGCCTC TCTTAGACTGGGGATTACACAGGCTTGCCTCTCTTACTCGCCTCTTCATTACAGCCGGATGTGCACATATTTTATCTTTTCCATGTGAGGAGACAGGAAT GATGCTGTCAACTTCTCTATCCAGCATGTCCATTAACCTCACCTTCCTTCAAGAGCTTTGGATCTCTGATTGCCCAATGCTCAAATCCCTACCAGAAAAT GGCTTGCCTTCCTCACTTTTGGAACTATACATCCATGATTGTCCTCTACTAAAACAG
AA sequence Show only first row Show all	>Potri.001G022800.2 pacid=42792274 polypeptide=Potri.001G022800.2.p locus=Potri.001G022800 ID=Potri.001G022800.2.v4.1 annot-version=v4.1 MPLGIKNLKRLRKLYDSVVSRKIGHGIEELMDLNFLCGTLCISRLENVVDHRRARQANLPEKQDLEALVLKWSSDITDSRNERIENDVLDMLQPHQGLKE LTINSYSSTEFPSWVGDPSFSNMVLLSLENCENCTSVPALGLLKSLKDLSITGMSGLQSIGREIYGECCSNPFPSLETLYFKDMPGWNYWHANGEEQVEV FPRLHKLSLLNCSRVLGRLLYYLPSLKELVICESKCLSVSISSFPMLRNLDVDGCKELICRSTTQFSSLNSVVLSCISNFSFLTLGFMQGLAEFKNLKIT GCQEITDFWQNGEEGQELKLGLPCSLEMLKLIDCESLQQPLILHGLRSLEELHIEKCAGLVSFVQTTLPCTLKRLCISYCDNLQYLLEEEKDANISSTSL LEYLDIRNYCPELGSIAETFCYMSPEQIEIKYCGKLACLPEGLNMLSHLQENTICNCSSILSFPEGGFPATSLRKLYMGWCEKLKALPERLRSLTSLVEL DIHTRPSFVSFPQEGFPTNLTSLLITNLNFCKPLLDWGLHRLASLTRLFITAGCAHILSFPCEETGMMLSTSLSSMSINLTFLQELWISDCPMLKSLPEN GLPSSLLELYIHDCPLLKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G022800 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069300 [exp]	6.32	0.8424
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	6.63	0.8206
					Potri.001G386950 [exp]	7.34	0.8331
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	8.00	0.8148
AT5G36930			Disease resistance protein (TI...		Potri.003G084333 [exp]	9.48	0.7917
					Potri.019G017300 [exp]	11.66	0.8577
					Potri.001G290300 [exp]	13.19	0.8489
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.003G201600 [exp]	18.65	0.8198
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	18.70	0.8170
					Potri.008G017001 [exp]	22.44	0.8311

Compare expression of checked genes

Potri.001G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.