Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51930 523 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 254 / 3e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 250 / 9e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 239 / 5e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 236 / 1e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 236 / 7e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 230 / 8e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 227 / 3e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 223 / 8e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 199 / 1e-59 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202700 [exp] 731 / 0 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 260 / 2e-82 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 256 / 8e-81 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 241 / 7e-75 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 242 / 1e-74 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 236 / 6e-73 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 234 / 1e-72 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 233 / 2e-71 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 221 / 4e-68 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039568 [exp] 574 / 0 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 564 / 0 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 245 / 6e-77 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 240 / 6e-75 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 239 / 2e-74 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 237 / 6e-74 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 223 / 1e-68 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 221 / 1e-67 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 222 / 4e-67 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 216 / 4e-66 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G022900.2 pacid=42790744 polypeptide=Potri.001G022900.2.p locus=Potri.001G022900 ID=Potri.001G022900.2.v4.1 annot-version=v4.1 ATGGATCTTCTTGTGTCAGAAATCACAACTCCTTCAACTCCATTATTATTTGCAGCAGCTACAAGTACTATTGGCATGAGTAGTACTAGCAGCAGCAGCA GTATTTGCAGCAGTGAAGCCAGTGAAGATAGCCCGGCAATATCATTTCGTTTTGAGCTTCAAGATGTCAAGTATGATTATCCAAGCAAATCTCTATCTGG GGCTTATTCATATAGGCCTTTGGCTGTTTTATCAGATCATGTTGGACCAGTTTCTTGCTTGGCCTTATGTGGGGAATTCATTCTAAGTGCTTCTCAAGGC AAGGATATTATAGTTTGGCAACAGCCTGATTTGAGGTTGTTTACAAAGTTTGGTCAAGGTGATGGTTCTGTTAAGGCATTAGTTTCTGTTGGCAATAAGG TTTTTACTGCTCATCAAGATAGTAGAATTAGAGTATGGAAGGTGTCAAGGAGGTCTGAAAACGTGTTTAGGCTTGTTGATACACTTCCTACTACAAAGGA TTATTTAGGAAAGTTTATGAAGCAAAGTAATTATGTGCAAACTAGGAGGCATCATAAGAAATTATGGATTGAACATGCTGACAGTATTTCTTGTTTAGCT GTTTATAATGGGTTAGTTTATTCTGGTTCTTGGGACAAGACTCTTAAGGTTTGGAGGATATCAGATTTGAAGTGTTTGGAGTCAATTAAGGCTCATGATG ATGCTATAAATGGATTGGTGGCTTGTAAAGGGATAGTTTATTCAGCATCTGCAGATGGGAAAATAAAGGCTTGGGGGAAAGAGGGAAAGAGTTCACATTC TTTGAAGGGGATTTTGGAGGGTCATAAAGATGTTTCGCTTAATTCAGTGATTGTTTCAGATGATGGAAAGTGGGTTTATGGAGGAGGATCAGATGGGTTT GTGATGGGGTGGGAAGGGAGTTATGATTTTGTGAGTTGGAAGATGGTGTCTGAGACGAAAGCACATCAAATGGCTGTTTTGTGCATTTGTCTAGCGGGGG AGTTTTTGTTTAGTGGATCAGCTGATAAGAATATTGGTATATGGAAGAGAGAGGCTTTTGGTAAGCTTTCCAAGGTCGGGGTCATAAATGGCCATGAAGG GCCTGTCAAGTGTCTACAAGCATCACCTAATATTGTTGGTGGTGGGTTCTTGCTTTACAGTGGTGGCCTTGACAAGAGTTTAAGGGTCTGGTGGGTGCCC AAGCACTCTACATTAGAGAATACAGAGGAAAAGTCCATCAGCTTGTGTTAG
AA sequence Show only first row Show all	>Potri.001G022900.2 pacid=42790744 polypeptide=Potri.001G022900.2.p locus=Potri.001G022900 ID=Potri.001G022900.2.v4.1 annot-version=v4.1 MDLLVSEITTPSTPLLFAAATSTIGMSSTSSSSSICSSEASEDSPAISFRFELQDVKYDYPSKSLSGAYSYRPLAVLSDHVGPVSCLALCGEFILSASQG KDIIVWQQPDLRLFTKFGQGDGSVKALVSVGNKVFTAHQDSRIRVWKVSRRSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKKLWIEHADSISCLA VYNGLVYSGSWDKTLKVWRISDLKCLESIKAHDDAINGLVACKGIVYSASADGKIKAWGKEGKSSHSLKGILEGHKDVSLNSVIVSDDGKWVYGGGSDGF VMGWEGSYDFVSWKMVSETKAHQMAVLCICLAGEFLFSGSADKNIGIWKREAFGKLSKVGVINGHEGPVKCLQASPNIVGGGFLLYSGGLDKSLRVWWVP KHSTLENTEEKSISLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	0	1
AT1G25510			Eukaryotic aspartyl protease f...		Potri.008G118100 [exp]	1.41	0.8540
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	2.82	0.7939
AT5G21105			Plant L-ascorbate oxidase (.1....		Potri.009G159700 [exp]	5.09	0.7718	AO1.4
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	6.00	0.7826
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	12.48	0.7863
AT1G06330			Heavy metal transport/detoxifi...		Potri.019G106500 [exp]	14.49	0.8031
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	15.96	0.7549
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	16.52	0.7757	SKS1.3
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	22.36	0.7558	RHG4.2
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	23.45	0.7204

Compare expression of checked genes

Potri.001G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.