Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 345 / 1e-110 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 343 / 6e-110 Purple acid phosphatases superfamily protein (.1) AT4G24890 338 / 8e-108 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT2G03450 235 / 2e-68 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13900 219 / 1e-62 Purple acid phosphatases superfamily protein (.1) AT3G20500 123 / 6e-30 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52780 122 / 8e-30 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 122 / 2e-29 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 118 / 7e-28 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT1G56360 117 / 1e-27 PAP6, ATPAP6 purple acid phosphatase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 1132 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 348 / 2e-111 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 336 / 6e-107 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158400 [exp] 330 / 2e-104 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 329 / 2e-104 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.008G096000 [exp] 322 / 1e-101 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 225 / 1e-64 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G423700 [exp] 129 / 7e-32 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.006G063700 [exp] 127 / 4e-31 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039565 [exp] 944 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 883 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019772 [exp] 871 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 847 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 831 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 332 / 1e-105 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 330 / 2e-104 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036904 [exp] 329 / 2e-104 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 230 / 2e-66 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 222 / 2e-63 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G023400.1 pacid=42789722 polypeptide=Potri.001G023400.1.p locus=Potri.001G023400 ID=Potri.001G023400.1.v4.1 annot-version=v4.1 ATGAAACCCTCAACATCTTCTTCTTCTTCTTCTTCTTCTTCGGTTCTAAATTCTTTCCTCGTTTTGCTAGCCTTCATTCCCTTTTCTTCCTCATACTTGC TGCCTCCGTCGATCATTGGATCAACTGTTGAGCACCAGAACCATACAGCAATATCGAGTTTTCGAGTAGTAAATAGAAGAAACTTAATTCAGTGTCCCGA CCCCAACCCTTACCTCCAAATCAATGTTAGCTCAAAAAACAGCCCTTTATCAGACGATGAGTATGTCAATGTTACCGTCAGTGGAGTTTTTCATCCTTCG GATGGTGACTGGGTCGCCATGATATCACCTTCTGATTCCAATGTCAAAAGTTGTCCTTTGAACAAAATTAAATACGTGCAGACTGGTGATACTAGTAAAC TCCCTCTACTTTGTCATTATCCTGTGAAGGCACAATACGTGAGCAATGATCCAAGCTATCTAAAGTGCAACAAGCAGGAATGCAAGAAATACAACAATAC TGTTTGTGAAGTGACAACTTGTAGTGGTACAATATCATTCCATGTCATCAACATCAGGACTGATATCGAATTCGTGTTCTTTGCTGGAGGTTTTGAAACA CCTTGCATTCTAACAAGGTCTGCCCCCATGAAGTTTTCCAATCCAAACCAGCCATTACATGGACATGTTTCAAGCACAGATTCCACAGCAACATCGATGA GATTAACATGGGTCAGTGGGAGTAAAGAACCTCAAGAAGTACAGTATGGGGATGGAAAAACACTGATATCAACAATCACAACATTTTCACAAGATGATAT GTGCACTTCGGTTCTTCCGAGTCCTGCCAAGGACTTTGGGTGGCATGACCCTGGATTCATTCATTCAGCAGTCATGACAGGACTAAGACCTTCAACCGCA TACTCCTACAGATATGGAAGTGATTCAATTGGCTGGAGTGATAAAATCCAGTTTCGAACTCCACCTGCTGGCGGTTCTGCCGAACTAAGATTTCTTGCAT TTGGTGATATGGGGAAGGCTCCTCTTGATCCTTCTGCCGAACACTACATTCAGCCAGGATCTCTCTCGGTGATTAAAGCCATGACAGACGAGGCAGAATC CGGAAATGTAGACTCCATTTTCCACATTGGAGATATAAGTTATGCAACAGGATTTTTAGTTGAATGGGATTTTTTTCTTCACCTTATAAGTCCTCTGGCT TCTCAAGTGTCTTACATGACCGCAATCGGAAACCACGAGAGAGATTACATAAATTCTGGATCTGTGTACATAACTCCGGATTCGGGCGGAGAATGTGGAG TTGCTTATGAGACCTATTTTCCAATGCCAACCTCAGCAAAGGATAAACCATGGTACTCTATAGAACAAGGACCTGTTCACTTTACAGTCATTTCAACCGA GCATGACTGGACTGAAAATTCTGAGCAGTATAAATGGATGGATCAGGACATGTCTTCGGTTGATCGATCGAAAACTCCTTGGCTAATTTTTGCTGGACAC AGACCAATGTATTCCTCAACTGATGGATTTAGCACCGACGACAAATTTACAAAGGCTGTAGAACCATTGTTGGTGCAGTATAAGGTTGATATGGTTCTCT TCGGCCATGTTCACAATTACGAGAGAACATGTTCTGTTTATGAAAGCAATTGCCTGGCCATGCCTTCTAAAGATCGAAATGGTATCGACACATACGACCA CAGCAATTTCAGTGCCCCAATGCAAGCAGTTATTGGTATGGCTGGCTTCAGTCTGGACAATTTCTCACAACCCGGAAGCTGGAGTTTGGAAAGGATTTCT GAATTCGGGTATCTAAGAGGGCATGCAACAATGGAGGACATAAACTTAGAGTTCGTGAATTCAAATACTAGACAAGTTCAAGACAGCTTCCGCATCACCA AAGGACAAAAATAG
AA sequence Show only first row Show all	>Potri.001G023400.1 pacid=42789722 polypeptide=Potri.001G023400.1.p locus=Potri.001G023400 ID=Potri.001G023400.1.v4.1 annot-version=v4.1 MKPSTSSSSSSSSSVLNSFLVLLAFIPFSSSYLLPPSIIGSTVEHQNHTAISSFRVVNRRNLIQCPDPNPYLQINVSSKNSPLSDDEYVNVTVSGVFHPS DGDWVAMISPSDSNVKSCPLNKIKYVQTGDTSKLPLLCHYPVKAQYVSNDPSYLKCNKQECKKYNNTVCEVTTCSGTISFHVINIRTDIEFVFFAGGFET PCILTRSAPMKFSNPNQPLHGHVSSTDSTATSMRLTWVSGSKEPQEVQYGDGKTLISTITTFSQDDMCTSVLPSPAKDFGWHDPGFIHSAVMTGLRPSTA YSYRYGSDSIGWSDKIQFRTPPAGGSAELRFLAFGDMGKAPLDPSAEHYIQPGSLSVIKAMTDEAESGNVDSIFHIGDISYATGFLVEWDFFLHLISPLA SQVSYMTAIGNHERDYINSGSVYITPDSGGECGVAYETYFPMPTSAKDKPWYSIEQGPVHFTVISTEHDWTENSEQYKWMDQDMSSVDRSKTPWLIFAGH RPMYSSTDGFSTDDKFTKAVEPLLVQYKVDMVLFGHVHNYERTCSVYESNCLAMPSKDRNGIDTYDHSNFSAPMQAVIGMAGFSLDNFSQPGSWSLERIS EFGYLRGHATMEDINLEFVNSNTRQVQDSFRITKGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.001G023400 [exp]	0	1
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.001G106900 [exp]	1.41	0.9282
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	4.00	0.8859
AT2G14900			Gibberellin-regulated family p...		Potri.007G051300 [exp]	5.65	0.9187
AT2G18550	HD	HB-2, ATHB21	homeobox-2, homeobox protein 2...		Potri.005G126100 [exp]	6.24	0.9188
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.014G058600 [exp]	12.24	0.9043
					Potri.018G122600 [exp]	19.23	0.9078
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	24.55	0.8575	Pt-HA1.5
AT1G72430			SAUR-like auxin-responsive pro...		Potri.003G071000 [exp]	26.38	0.8365
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	28.33	0.8939
					Potri.018G119400 [exp]	37.78	0.9032

Compare expression of checked genes

Potri.001G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.