Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 145 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 145 / 3e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 137 / 6e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G49030 144 / 5e-40 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT2G21100 134 / 9e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 132 / 2e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 132 / 3e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 130 / 1e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023800 [exp] 180 / 6e-58 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 168 / 4e-53 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 159 / 9e-50 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 157 / 1e-48 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 155 / 5e-48 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 154 / 1e-47 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 153 / 3e-47 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 153 / 3e-47 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G214600 [exp] 151 / 1e-46 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039561 [exp] 169 / 2e-53 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 159 / 1e-49 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 154 / 2e-47 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 151 / 3e-46 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 146 / 2e-44 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 145 / 3e-43 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 142 / 3e-43 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 144 / 6e-43 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 142 / 1e-42 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 142 / 1e-42 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [poplar] [flax] AOC_barrel PF03018 [poplar] [flax] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G023600.1 pacid=42792570 polypeptide=Potri.001G023600.1.p locus=Potri.001G023600 ID=Potri.001G023600.1.v4.1 annot-version=v4.1 ATGGCTTATTTTCTTGTTCAAATTCTTGTTCTCTTGTATTTCACTGTTTTCTTGACGTTTTGTAGCACTACTAATGGCAAATTCTCAGAGAAATCACCAA TGATCATATCCACTAAACGCATGGAGAAAATGACTCGCCTGCGGTTCTACTTCCACGATATTCCCAGTGGGAAAAACCCAACAAACATGAGAATTGCTGG ACCAGAAAAGACAACAGCTGATAGCTTTGGCAGCACTTTTATGGTGGATAGTCCATTAACAGAAGAGCCAGAACCTAATTCAAAACTTGTGGGAAGAGCA CAGGGCGTGTATGCTTTTGCTTCTCAACATGATGCTGGATTGCTTATGGTTTTAAATTTTGCTTTTTTGGAGGGTACGTACAATGGCAGTGCCCTAAGTA TTCTAGGTCGCAGTCCAGTGCTCGATAACGTCAGGGAAATGCCAATTGTTGGAGGTAGCGGGCTTTTCCGGTTTGCTCGAGGCTATTCATTGTCAAAGAC AATCTCATCTAGTCAAAAGAGCAGAAATGTTGTCGTTGAATACAATGTGACTGTTGTGCATTTCTGA
AA sequence Show only first row Show all	>Potri.001G023600.1 pacid=42792570 polypeptide=Potri.001G023600.1.p locus=Potri.001G023600 ID=Potri.001G023600.1.v4.1 annot-version=v4.1 MAYFLVQILVLLYFTVFLTFCSTTNGKFSEKSPMIISTKRMEKMTRLRFYFHDIPSGKNPTNMRIAGPEKTTADSFGSTFMVDSPLTEEPEPNSKLVGRA QGVYAFASQHDAGLLMVLNFAFLEGTYNGSALSILGRSPVLDNVREMPIVGGSGLFRFARGYSLSKTISSSQKSRNVVVEYNVTVVHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49040			Disease resistance-responsive ...		Potri.001G023600 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008402 [exp]	1.00	0.9988
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206800 [exp]	3.46	0.9974	CTS2.10
AT4G08910			unknown protein		Potri.014G150900 [exp]	4.00	0.9955
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119800 [exp]	4.47	0.9971
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.003G192650 [exp]	5.74	0.9924
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.002G253400 [exp]	6.48	0.9966
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.005G175200 [exp]	7.07	0.9935
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.001G470700 [exp]	8.00	0.9857	Pt-PETF.2
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014398 [exp]	8.48	0.9948
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073066 [exp]	10.95	0.9912

Compare expression of checked genes

Potri.001G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.