Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38800 134 / 1e-32 Plant calmodulin-binding protein-related (.1) AT3G54570 108 / 6e-25 Plant calmodulin-binding protein-related (.1) AT5G04020 86 / 1e-16 calmodulin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201400 [exp] 1229 / 0 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.006G043900 [exp] 129 / 3e-30 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.016G041100 [exp] 107 / 3e-23 AT5G04020 114 / 4e-25 calmodulin binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039544 [exp] 166 / 2e-42 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10024175 [exp] 151 / 9e-38 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1) Lus10035417 [exp] 79 / 9e-15 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10031023 [exp] 79 / 9e-15 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10034717 [exp] 44 / 0.0002 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G024100.1 pacid=42791860 polypeptide=Potri.001G024100.1.p locus=Potri.001G024100 ID=Potri.001G024100.1.v4.1 annot-version=v4.1 ATGAAGAAGAAAATGAAAAGGTCAAGATCGATCAAGCTTTCTGATATTGAGAGCTTGAAATCATCATCACCTTTGAGGAAATCCATGTCACAGCCTGGAA AGCCGCCGCCTCCTCTCAATGCTCCAACAACCGAAGCAACACCACAGAAGCAGCTTATGATCAGAACAACTGATGGTTCGCCGAATTATATGAAGTCCAC CAGCAGTTCAGAGGCAAGAAAGGAGCGTTCCCTGGTGAGTCCCTTGAATACTCAAGCCGGTTCAAATGGTAAGAACTTGCATCGTAGAAACTCGGCTAGT TCGAAATTTAGCCCTGCTTCTAGTAACAAACAGGCAAGAACTTTATCAAAGACATCTAGTTTGAAGCTGGTGAGGACTCCCAGTTTTAAGCCAATGAGAG GTACTGCGAGAAAATGTTCTAGAGTAGCTCTTTGTGCAGACGTGAGTGCACAAACAACTACCTGTTCTTCAACCCTGAAGGACTCCAAGTTTCCTCCATA CCTTATGCTTAATCCTGGGGGTACTGAATCAGAGGGAACTTCTGTCAAGAAGGTATGCCCGTACACCTATTGCTCTCTTAACGGTCATCATCACAAACCT GTGCCTCCACTTAAGTGCTTCTTGAAGGCAAGGAGGCATTCGTTGAAGGTCCAGAAAAGCATGAAATGGGAGGTTTTATCCCCCCGTAGAGCCAGGCCAT CTGGTGAAGGAACAGAAGAAATTCATGGCGACAAACCTATGATACAAGAAACTGGCAAGGATTTCTTCATTGAAATCTTCTCCAAAAATACAGAAGATAG TGCTTTTTCTGGAGAACCTGAAAGACGGATTAACGAGTCCTGTTTTTACACTAGCCATGAAGGAGCAGCTGAACAAGACAGCAACAATCAAGTTTCTGAG AGCTTGTCAGATGAATCACAAGAATCAGAGATTGATTTTGAGGAAAATTCCAATAATACAAATGAACCAGAGATGGATGTTACAGGAGTAGAAGATGAAA GGGATGGGGATACAGACTGCTCATCGACCTTGTCCGAAGAAGAAGCAATCATGGGAAGCTGTGAAAACAGGAGTGACATTGAAGGGGAATGCCAAGCAAG TATGGATGAAGATGATAACATCTCTGAAGCAACTGACATGGAGTGGGAGGAGGGCCAACTTTCTACTTCAGAGGTTGTTACAGAAGCTGATGATTTGAAC AAGCCTGATGAAGATGAATTTTGCACCAAAGTCGAGGGCACACCAGGAATCAAGAAACTTGATTGGCATGAGGATTCTGAGATCATTATATCAGACAACG CAGTCAGCAACTGCACAGAGGAAATTCTAGCTGATGAGATACTGCAAGAACTTTTTGCAGAGGAAACTGCCTACATTGATATGCAATGCAGCGATAGTGA TTCTGAGTCGGATGGCATACTCCATTATTGGGAGATTCTCGAATCTATCCAAGGGGCACGGGACTTAGCTTATGATCAAGAGTCTTCAGCTGAAGATGCA TCTGAGGCGCTTAAAACTGAGGAGGCCAGGGAGAAAATTCAGGAGGAAGGAGTTCATGAAACGGAGAATGATGTCAATGAAACACATCCTCAACTTGGAG ATGATGAAAATGATTGCACCACAGACATTTCAGCTGAAGTTCTAAATGGTCACCAGGAGGATACATCTCTTCAAACTGATCATGCAACTATGAGGCTTCA GAACCAAATTGCTGATTCTCCTCAGATTTCTGACAAGATGGATATGGTCGGAACAAACAAAGAGGATTCCATTGATCAACAGATTGAGGTTGCGGAGAAT AATCAAGATTTTGCCATTGCTGAACTCCCTTATGGTGAAGCTGGAGATGCAACAGAAGATCGAGAGCAAGTTGCCAATGCTGAATTGACATTTGAAATCC ATGTTTCTGATTCCCCTCAGAGTTTTTCTGAAGCTGATCAAGATGATGCTGAACTAAATGACGATGGAAACCACATGACAACTGAAGCTTGCCAGCTTGA TGTAACTGTTGAAGACAGCAGTTCAAGTCAAGATCTTGTTGCCCACAGCACTCCAACTGAGCCTCATAACCACCAATTGGATGAGCACGATGAGACAAGT AATGTTCTTGAGAGCCAGAACTTATCTGAGGAAGATCAAGATGATGCTAACAAGATCAAAATCCTAACTGCCATGGATTTTGAGGCACAGAGTGATTCAA GAATGCAAAAAATCAATTTAACCAGAGATGATACAAGAGATGTTGAGAAGACAGAAGTGGAAGTTTGTAAGGAGTCAGATACCGCAGAAACCCTCCTCTC TGCCAACAATGGAACCAGCACAGGATCAAAGCGTCCATTTTTATACACAAGAGGAAATCCCGATCAAGAACTTCACGATACCTGCAACAACAGGAAATGG ACATTCGGAGACAAGAAACCCATCGTGGACCTGGAGGAAGAGAGAGAATTCAACCCAAGAGAACCAAATTTCCTTCCTGTTGTTCCTGATCCAGAGGAAG AAAAGGTCGATCTCAGGCACCAGATGATGGATGAAAGGAAAAATTCTGAAGAATGGATGATTGATTATGCACTACGACAGACTGTCACCAAGCTCGCTCC AGCTAGGAAGAGGAAGGTGGCACTACTTGTTGAAGCTTTCGAAAAAGTCTTGCCAACACCGAAATATGAAACTCGTATCAGGCATGCACCAGCAGCATTT TCTCACACAAGATCGATTCAAGCTTGTAGCTGA
AA sequence Show only first row Show all	>Potri.001G024100.1 pacid=42791860 polypeptide=Potri.001G024100.1.p locus=Potri.001G024100 ID=Potri.001G024100.1.v4.1 annot-version=v4.1 MKKKMKRSRSIKLSDIESLKSSSPLRKSMSQPGKPPPPLNAPTTEATPQKQLMIRTTDGSPNYMKSTSSSEARKERSLVSPLNTQAGSNGKNLHRRNSAS SKFSPASSNKQARTLSKTSSLKLVRTPSFKPMRGTARKCSRVALCADVSAQTTTCSSTLKDSKFPPYLMLNPGGTESEGTSVKKVCPYTYCSLNGHHHKP VPPLKCFLKARRHSLKVQKSMKWEVLSPRRARPSGEGTEEIHGDKPMIQETGKDFFIEIFSKNTEDSAFSGEPERRINESCFYTSHEGAAEQDSNNQVSE SLSDESQESEIDFEENSNNTNEPEMDVTGVEDERDGDTDCSSTLSEEEAIMGSCENRSDIEGECQASMDEDDNISEATDMEWEEGQLSTSEVVTEADDLN KPDEDEFCTKVEGTPGIKKLDWHEDSEIIISDNAVSNCTEEILADEILQELFAEETAYIDMQCSDSDSESDGILHYWEILESIQGARDLAYDQESSAEDA SEALKTEEAREKIQEEGVHETENDVNETHPQLGDDENDCTTDISAEVLNGHQEDTSLQTDHATMRLQNQIADSPQISDKMDMVGTNKEDSIDQQIEVAEN NQDFAIAELPYGEAGDATEDREQVANAELTFEIHVSDSPQSFSEADQDDAELNDDGNHMTTEACQLDVTVEDSSSSQDLVAHSTPTEPHNHQLDEHDETS NVLESQNLSEEDQDDANKIKILTAMDFEAQSDSRMQKINLTRDDTRDVEKTEVEVCKESDTAETLLSANNGTSTGSKRPFLYTRGNPDQELHDTCNNRKW TFGDKKPIVDLEEEREFNPREPNFLPVVPDPEEEKVDLRHQMMDERKNSEEWMIDYALRQTVTKLAPARKRKVALLVEAFEKVLPTPKYETRIRHAPAAF SHTRSIQACS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38800			Plant calmodulin-binding prote...		Potri.001G024100 [exp]	0	1
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.001G047500 [exp]	5.09	0.7610
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	9.05	0.7893
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	21.70	0.7554
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.002G123800 [exp]	24.49	0.7284
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	28.28	0.7464	PtrMTP2,Pt-MTP1.2
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	29.52	0.7512
AT4G10780			LRR and NB-ARC domains-contain...		Potri.018G145568 [exp]	32.98	0.7398
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	33.67	0.7439
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.008G116000 [exp]	33.80	0.7355
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122901 [exp]	35.51	0.7287

Compare expression of checked genes

Potri.001G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.