Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38780 399 / 7e-136 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016355 [exp] 353 / 5e-118 AT2G38780 374 / 2e-126 unknown protein Lus10019776 [exp] 349 / 1e-116 AT2G38780 368 / 7e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G024200.1 pacid=42791129 polypeptide=Potri.001G024200.1.p locus=Potri.001G024200 ID=Potri.001G024200.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTCACGTTCAACATTCATGGCTATCTTCTCTCACCAAAAACCCCACTACCCTTTTCTCCTCCAAAGCCTCTCCATTCAAAGTTTCACTCT CTCTCAACTCTTCTAATGCTGAATCTCCAAACCCCTCCTCACAGAACCCACCAGATCCCGAACCAGGTCCTGTGGACCCTGTAAAGCTTGCTTTTGAGAA GGCTAAAGCATATAGAAACTCCATTGAAACCAGCAAGAATGTGAAGATTGAGCAGAACCCAGTTGAGGATTCTGGTGGTTCTATAATTGGGATTGTTGAG AAAAATAAGCAAGTGTCAGATCCTGTTAAGGGTGCTGTGGAGTACAAGACAGATATAGGAGTTGTTGGTAGCAGTGGTGTTGTGGAAGGTATTGCAGATA GTAAAACAAATTCAGGATTAAAGGGACGGAATTTAGGAAGTGGAGTGGTGGATAAAACGTCGAAGAAAGAACAAAAACTGTCGATCTCAAGCATTGATTT TGTGGGGCTTGAATTTGCGGATAAGAAAAAGGGCAGGGGACTACCTGCTGGATTGGTTCCAATCACAGACCCTTTTTCAGAAGGGAACTTGCCTGATGTA GAAATAATTGTCGGGGACACTAGCAAATTTGAGGATCCCTCTACATTGACGTCCAAGCCTACCCAAGAAGATAATCCAGATCTTTACAAGCCGAAGGTTT CTACATGGGGTGTCTTTCCTAGACCTGGAAACATTTCAAAGACGTTTGGTGGTGGAAAAACTATTCGCCCTGGAGATGAGCTTGAAACAGCAGAAGCACG AGCTGCTAAGGATGAGCGCACAAAGCAATTAATAGCTGCCTACAGGAAGAGCATTGGCTTAAATGTTGATCCAAACGTGAAATTGGAGTGTGAAAAGGCC TTGAAGGATGGCGACTCCTTGATGGATTCTGGAAAGCTTAATGACGCGCTACCCTACTATCAAATGGTTTTGGATAAGTTGCCATTTAAGAGTGAACTTC ATGGGTTAGCTGCTTTGCAGTGGTCAATCTGTCAAGATTCACTCAGCAGACCAAACGAGGCTCGTGCTATGTATGAAAAACTCCAGTCTCATCCAAATGT TAAAGTGAGCAAGATAGCAAGGCAATTTATGTTCAGTTTCCAGGCCATGGAGAAGTTGAAGTTTACAGGCTCAAATTTCTCGCCGACAAGCACAGGCTAC CAGTACTATTTTGAGAAATTTGTTGAAGATAAAACCAGCTACCCTCAAGGAGAGGCTGGAATTGAAATTGGTGTATTGAATCAAGCCCTCCCATATATGA TTTTTCTTGTTTCTCCCATTTTTATGGTTCTGTTTGCTGCTTTACGGGGAGGGAATACAAACTAG
AA sequence Show only first row Show all	>Potri.001G024200.1 pacid=42791129 polypeptide=Potri.001G024200.1.p locus=Potri.001G024200 ID=Potri.001G024200.1.v4.1 annot-version=v4.1 MASLHVQHSWLSSLTKNPTTLFSSKASPFKVSLSLNSSNAESPNPSSQNPPDPEPGPVDPVKLAFEKAKAYRNSIETSKNVKIEQNPVEDSGGSIIGIVE KNKQVSDPVKGAVEYKTDIGVVGSSGVVEGIADSKTNSGLKGRNLGSGVVDKTSKKEQKLSISSIDFVGLEFADKKKGRGLPAGLVPITDPFSEGNLPDV EIIVGDTSKFEDPSTLTSKPTQEDNPDLYKPKVSTWGVFPRPGNISKTFGGGKTIRPGDELETAEARAAKDERTKQLIAAYRKSIGLNVDPNVKLECEKA LKDGDSLMDSGKLNDALPYYQMVLDKLPFKSELHGLAALQWSICQDSLSRPNEARAMYEKLQSHPNVKVSKIARQFMFSFQAMEKLKFTGSNFSPTSTGY QYYFEKFVEDKTSYPQGEAGIEIGVLNQALPYMIFLVSPIFMVLFAALRGGNTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38780			unknown protein		Potri.001G024200 [exp]	0	1
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.001G211300 [exp]	2.23	0.9811
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	2.44	0.9835	Pt-RPL1.1
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	2.44	0.9846	RBP29.1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	2.82	0.9843	Pt-HHOA.1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	4.58	0.9804
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	7.21	0.9819
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	9.38	0.9796
AT2G04360			unknown protein		Potri.014G169200 [exp]	9.79	0.9749
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	10.09	0.9809
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Potri.007G106500 [exp]	11.00	0.9791

Compare expression of checked genes

Potri.001G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.