Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20780 107 / 2e-23 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 84 / 2e-16 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G68940 75 / 1e-13 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT2G23140 64 / 5e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 57 / 4e-08 ARM repeat superfamily protein (.1) AT4G16490 56 / 8e-08 ARM repeat superfamily protein (.1) AT1G23030 54 / 5e-07 PUB11 ARM repeat superfamily protein (.1) AT5G58680 52 / 1e-06 ARM repeat superfamily protein (.1) AT2G28830 50 / 1e-05 AtPUB12 PLANT U-BOX 12 (.1) AT3G54790 49 / 2e-05 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201000 [exp] 1291 / 0 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 320 / 3e-95 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 310 / 2e-91 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 280 / 2e-80 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 193 / 7e-51 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.002G007800 [exp] 113 / 2e-25 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 110 / 1e-24 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 100 / 2e-21 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 75 / 1e-13 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034132 [exp] 841 / 0 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 834 / 0 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 274 / 2e-78 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 189 / 2e-49 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 147 / 7e-36 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 112 / 4e-25 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 104 / 8e-23 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10024899 [exp] 72 / 2e-12 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040659 [exp] 71 / 4e-12 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 71 / 5e-12 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.001G024600.6 pacid=42788509 polypeptide=Potri.001G024600.6.p locus=Potri.001G024600 ID=Potri.001G024600.6.v4.1 annot-version=v4.1 ATGGAAAATTCTGATAGCAGAAGCATTTCTGAGATTGAATCAGAGCAACAAGCCTCGACAGAAGAGGCGGTATCACTTGCTAAGAACTTGGAATTCGATA GAGAAGTATTCGCTGAATTTGCAGTTCTGCTTGACAAGTTCACACCGATTCTCATATCAATAAACGATAATGAAAAACTCATGGACAGGCCATCAGTTCA AAAGGCAGTTGGATCCATTGAAAAAGAGCTTAGTCGCGCTAAGGACTTAATTGAAGGAGCTTGTTCAAGATCCCCCATCAAGCAGATTGAGGTTGTTACT CAAGAACTTGGGAGATCATTAGGCCTTGTTCTCTTTGCAAGTATTGATGCATCCACAGAAGTCAAACAAAGTATTGCAGCATTACACAGAGAATTGATGA ATGTGAAGTTTGATACCAGTTTTACTCCAAGTCCAAGTCCAAGTCTCAGTCCCAGTCCCAGTCCTTGTGCAAATCATGGTCCTAGACCAAACAAAGAATC AGGGTTTGTTAGTGAGCAAGATTCTTTTATTAATGAAATCGAGGAGGAAAAAATTAGTCTTAGCATTGATGATGTTGTGCGACATCTCAAGTGTGGAAAT GATGAAGAATTCAGGCTTGCACTTTTGGTCTTAGGTGATTTAATTAGGGATCAAGTAATTGAAAAGGAGTGGATTAATGACGAAGATATTATTCCAATTC TGTTTAATCGACTTGGCTCGAGCAAGCCTCACAACCGGTTAACCACCATCCAGATACTGAGAATTCTTGCTTTGGAGAATGATGAAAACAAGGACAAAAT GACAGATGCAGTCTGTTTGTCAGTGTTGGTGAAATCTTTGGCACGCGACGCGGATGAAGGAAGGGAAGCTGTAGGACTATTGTCAGAACTCTCTGATATT TCTGCAGTTAGGCGAAGGATTGGAAGAATTCAAGGGTGTATTGTTATGTTAGTCACCATGCTTAATGGGGATGATCCGACTACTTCACAAGATGCGGCGA AGTTGTTGGTTGCACTGTCAAGCAATCCTCAAAATGTGCTTCATATGGCTGAGGCTGGTTACTTTAAACCTCTAGTTCATTGTCTGAAGGAAGGCTCTGA TAAGAGCAAGATCCTCATGGCAACAGCAGTTTCAAGGATGGAGCTCACAGATCTGTGCAGAGCCTCTCTTGGCGAAGATGGGGCAGTTGAACCCCTTGTA AAGATGTTTAAATCTGGAAAACTTGAAGCCAGGTTAGCTGCTTTAAATGCATTACAAAATCTATCAAACTTGACAGAAAATATAAAACGTTTAATCAGTT CAGGCATTGTAGTACCCCTGCTCCAGCTACTGTTTTCCGTGACATCTGTCCTTATGACTCTCCGTGAGCCGGCATCTGCAATACTTGCAAGGATTGCTCA ATCTGCAACTATTCTGGTTAAACAAGACGTAGCCCAGCAGATGCTCTCACTTTTGAACCTGTCTAGTCCGGTTATTCAGTATCATCTCTTGCAAGCTCTA AATAGTATTGCATCCCACTCTAGTGCATCCAAAGTAAGAAGAAAAATGAAGGAAAATTGTGCAGTCCAGCTTCTTTTACCCTTTCTGACAGAGAGCAACA CCAATACCAGAACTGCTGCATTAAATTTGCTTTACACCCTTTCTAAAGATTCACCAGAAGAGTTCATGGAACACCTCGGAGAATCCTATCTCAGTAAAAT TGTCAGTATCATCTCATCACCAGAATCTGAAAGTGAAAAGGCTGCCGCAATCGGCATTTTGAGCAATCTTCCTGTTGGCAACAAGAAATCAACAGAAGCA CTGAAAAAATTACATTTTCTGCCCATTCTGATCTCACTAATGAGTTCAGGCGCATCATCATCAACAACATGGTTAGAAGAGAGCATCTCAGGCATACTTA TTCGCTTTACCGTTCCTTCTGATAAGAAATTGCAGCTTTTTTCAGCAGAACTAGGGATTATTCCTATCCTTGTGAAGTTGCTGTCAAGTGAATCATCAGT AGCCAAGTGTAGAGCAGCAACCTCACTAGCTCAACTATCGCAGAACTCCCTAGCCCTTCAAAAGTCCAGAAAATCGCGGTGGATATGTATGCCTCCTTCT GCAGACACTTTCTGCCAAGTCCATGATGGCTATTGCGTCATTAAAAGCACATTTTGTTTGGTCAAGGCCGGTGCTGTCCCTCCACTGATCCAAATATTGG AAGGTAAAGATAGGGAAGCTGATGAAGCTGCCCTCAACGCCCTCGCAACGCTCTTGCAAGATGAAATTCGGGAGAGTGGAAGCCTCTTCATAGCCAAAAC ATCTGGTGTTCAAGCCATAATAAGAGTGTTGGAATCAGGAACTGTAAAAGCTCAAGAAAAGGCACTGTGGATGTTGGAGAGAATTTTTAGAATTGAAGAG CATAGATCACAATATGGAGAATCTGCCCAGGTGGTCCTCATCGATCTTGCGCAGAATGGTGATCCAAGATTGAAATCAACAATTGCAAGAGTCTTGGCAC AGCTTGAGCTATTGCAAGCTCAATCTAGTTACTTCTGA
AA sequence Show only first row Show all	>Potri.001G024600.6 pacid=42788509 polypeptide=Potri.001G024600.6.p locus=Potri.001G024600 ID=Potri.001G024600.6.v4.1 annot-version=v4.1 MENSDSRSISEIESEQQASTEEAVSLAKNLEFDREVFAEFAVLLDKFTPILISINDNEKLMDRPSVQKAVGSIEKELSRAKDLIEGACSRSPIKQIEVVT QELGRSLGLVLFASIDASTEVKQSIAALHRELMNVKFDTSFTPSPSPSLSPSPSPCANHGPRPNKESGFVSEQDSFINEIEEEKISLSIDDVVRHLKCGN DEEFRLALLVLGDLIRDQVIEKEWINDEDIIPILFNRLGSSKPHNRLTTIQILRILALENDENKDKMTDAVCLSVLVKSLARDADEGREAVGLLSELSDI SAVRRRIGRIQGCIVMLVTMLNGDDPTTSQDAAKLLVALSSNPQNVLHMAEAGYFKPLVHCLKEGSDKSKILMATAVSRMELTDLCRASLGEDGAVEPLV KMFKSGKLEARLAALNALQNLSNLTENIKRLISSGIVVPLLQLLFSVTSVLMTLREPASAILARIAQSATILVKQDVAQQMLSLLNLSSPVIQYHLLQAL NSIASHSSASKVRRKMKENCAVQLLLPFLTESNTNTRTAALNLLYTLSKDSPEEFMEHLGESYLSKIVSIISSPESESEKAAAIGILSNLPVGNKKSTEA LKKLHFLPILISLMSSGASSSTTWLEESISGILIRFTVPSDKKLQLFSAELGIIPILVKLLSSESSVAKCRAATSLAQLSQNSLALQKSRKSRWICMPPS ADTFCQVHDGYCVIKSTFCLVKAGAVPPLIQILEGKDREADEAALNALATLLQDEIRESGSLFIAKTSGVQAIIRVLESGTVKAQEKALWMLERIFRIEE HRSQYGESAQVVLIDLAQNGDPRLKSTIARVLAQLELLQAQSSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	0	1
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	1.00	0.9254
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	1.41	0.9224	Pt-ATMRP14.3
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	2.00	0.9002
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	2.44	0.9064
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	6.00	0.8807
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	7.34	0.8871
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035700 [exp]	8.00	0.8655
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	8.66	0.8959	Pt-GLU1.2
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	9.53	0.8853
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	10.58	0.8851

Compare expression of checked genes

Potri.001G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.