Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 322 / 2e-104 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 321 / 4e-104 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 320 / 1e-103 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 305 / 4e-98 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 304 / 8e-98 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 290 / 2e-92 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12320 285 / 3e-90 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 280 / 4e-88 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G52970 271 / 9e-85 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 269 / 4e-84 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109300 [exp] 527 / 0 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 453 / 6e-156 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G137200 [exp] 450 / 2e-154 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136600 [exp] 445 / 1e-152 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.015G138900 [exp] 429 / 3e-146 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G113900 [exp] 335 / 1e-109 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 333 / 3e-109 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 325 / 7e-106 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 324 / 2e-105 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006323 [exp] 463 / 9e-160 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10005765 [exp] 400 / 5e-135 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 383 / 2e-128 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 374 / 7e-125 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 372 / 2e-124 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 357 / 3e-118 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10040353 [exp] 355 / 2e-117 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 348 / 9e-115 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 343 / 1e-112 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 341 / 4e-112 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G025200.2 pacid=42789566 polypeptide=Potri.001G025200.2.p locus=Potri.001G025200 ID=Potri.001G025200.2.v4.1 annot-version=v4.1 ATGGCAACAATAGTAACAGAAATATCATCCAATACTCTTTTTACTATTCTCTTTCTCTTGCCTCTCATTTATCTCATTGCCAAGCAGCTCAAGACACTGT ATTCATCAAGATTTGCACCACTACCACCAGGGCCATATTCATGGCCAATCTTAGGCAATGCCCTACAAATTGGAAATAGCCCTCATATTACTCTAGCCAG TCTAGCAAAAACCTACGGACCACTCTTCTCACTTAGACTTGGCAGCCAGCTTGTTATTCTTGCCGCATCTCAAGAAGCTGCCACCGAAATTCTAAAAACT CAGGATCGCTTTTTGTCCGGTAGGTTTGTTCCTGACGTAATACCAGCCAAGTGGTTAAAGCTTGAAAATTTGTCCCTTGGATGGATTGGAGAAGTCAACA ATGAATTTAAGTTTTTGCGAACTGTTTGCCAATCCAAGCTTTTCTCAAACAAAGCTCTATTGTCCCAATCATGTTTGCGAGAGAAAAAGGCGGCAGACAC TGTAAGATTTATCAGAACAATGGAAGGTAAGGTGTTGAAGATCAAGAAAGTAGCATTTGCAGCTGTTTTTAGTATGTTGACTAATATTCTCATCTCAAGT GACCTTATAAGTATGGAGCAAGAGAGTATGGAGGGAGAGATGACGGAAATTATAAGAAATATCTTCGAGGTAGGGGCTGCTCCAAATATATCCGATCTTT TTCCTATTCTAGCACCATTTGATCTGCAGAATCTACGGAAGAAGTCTAAGGAGTTGTATTTGAGGTTCAGTACCATGTTTGAAGCTATCATCGAAGAAAG AAGAGAAAGAAAGATGAGTTCTGATAATGCTTCAGGCAAAGAGGATTTCCTTGATACTCTGATCAGCAACGGTTCTAGTAATGAGCATATCAATGTCCTT CTTCTGGAGCTCCTGGTTGCTGGTTCAGACACAAGTACCTCAGCAATTGAGTGGGCAATGGCAGAACTATTAAGGAACCCACAATGCATGAAAAAAGCTC AAGCGGAACTAGCAAGTGAAATCAACCAGGACCTTATACAAGAATCTGATCTACCTAGACTAAAGTTCCTTCATGCTTGTCTCAAAGAAAGCATGAGATT GCACCCTCCAGGACCACTTCTTCTTCCTCACCGTGCCGTGAACTCATGCAAAGTGATGGGCTATACCATTCCAAAGAACTCTCAAGTGTTGGTGAATGCT TATGCAATTGGACGAGACCCCAAGAGTTGGAAAGATCCATTGGATTATAAACCTGAGCGATTCTTGACTTCGAATATGGATTTCAGAGGAAGCAATATTG AGTTCATACCATTTGGTGCTGGAAGGAGAGCATGCCCTGGTCAACCCATGGCTACCAAGCATGTTCCCTTGGTTCTTGCTTCATTGCTCCATTTCTTTGA TTGGTCACTTCCTACTGGACATGATCCAAAAGACATAGACATGACTGATAAGTTCCACACCAGTTTGCAGAAAAAACAACCTCTACTTCTCATTCCAAAA ATTAAAAATTGA
AA sequence Show only first row Show all	>Potri.001G025200.2 pacid=42789566 polypeptide=Potri.001G025200.2.p locus=Potri.001G025200 ID=Potri.001G025200.2.v4.1 annot-version=v4.1 MATIVTEISSNTLFTILFLLPLIYLIAKQLKTLYSSRFAPLPPGPYSWPILGNALQIGNSPHITLASLAKTYGPLFSLRLGSQLVILAASQEAATEILKT QDRFLSGRFVPDVIPAKWLKLENLSLGWIGEVNNEFKFLRTVCQSKLFSNKALLSQSCLREKKAADTVRFIRTMEGKVLKIKKVAFAAVFSMLTNILISS DLISMEQESMEGEMTEIIRNIFEVGAAPNISDLFPILAPFDLQNLRKKSKELYLRFSTMFEAIIEERRERKMSSDNASGKEDFLDTLISNGSSNEHINVL LLELLVAGSDTSTSAIEWAMAELLRNPQCMKKAQAELASEINQDLIQESDLPRLKFLHACLKESMRLHPPGPLLLPHRAVNSCKVMGYTIPKNSQVLVNA YAIGRDPKSWKDPLDYKPERFLTSNMDFRGSNIEFIPFGAGRRACPGQPMATKHVPLVLASLLHFFDWSLPTGHDPKDIDMTDKFHTSLQKKQPLLLIPK IKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	0	1
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	1.00	0.9575
AT4G35160			O-methyltransferase family pro...		Potri.013G120800 [exp]	4.47	0.9403	FOMT11,OOMT2.19
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136600 [exp]	4.89	0.9407	CYP80D1
					Potri.002G101101 [exp]	5.29	0.9374
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.012G105700 [exp]	5.91	0.9402
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136800 [exp]	6.00	0.9391
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	6.24	0.9279
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	7.34	0.9416
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	7.48	0.9371
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	9.00	0.9360	CYP721.5

Compare expression of checked genes

Potri.001G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.