Plant FIBer expression Database

Potri.001G025601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54480 373 / 1e-131 SKP5, SKIP5 SKP1/ASK-interacting protein 5 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024168
[exp]
392 / 2e-139 AT3G54480 370 / 3e-130 SKP1/ASK-interacting protein 5 (.1.2)
Lus10039556
[exp]
391 / 5e-139 AT3G54480 371 / 8e-131 SKP1/ASK-interacting protein 5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.001G025601.1 pacid=42792203 polypeptide=Potri.001G025601.1.p locus=Potri.001G025601 ID=Potri.001G025601.1.v4.1 annot-version=v4.1
ATGGAGGAGCAAGGCAAGCAAAAAAAGAAGAATAAAAAGCCATTATCATCATCTTTTTGCCCCATAAACAATCTTGATGATGGTTGCCTTATGCACATCT
TCAGCTTCTTATCACCAATTCCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGTGTTACTTGGCATGTCATCCTCGCTTATGGCTCCGAGTAGA
ACAATCTGCCAAAGATTTATCAGAGCCTGGAGTTTTCCCCAGCATTGAGAAGGCTGTCTCTGCTGCTAGGCCCGGCGACACCATTCTAATTGCAGCAGGT
GGGAGGCATCTTGCCTCTAATATTCAAATAAACAAACCTCTTTGCCTGATTGGTGGTGGTGAGCTTCCTGATGAAACAACTCTCTTATGTTCTCGAGGTT
CAGACAGTGCACTGGAGTTCATAAATACATGCAAACTAGCAAACCTAACAGTGAAGGCAGAGCTTGGTTGCTGCTTGCTTCACAGAAGTGGAAGGCTAAC
CATAGACAGTTGCATACTTCAATGTGAGGCAAGCCCTTTGGACTATCTCTCGTGCCCCATCATCAGTACAGCAGGGGGGAATGAGGTGGTGTCTTCCGCG
GTGAAAACTAAAGGTAATAGAGTTTCCGTTTCCCAAACCAGGATTGAAGGAGGTGCCAAAGCTGTCCTGACAAGCGGGGACCTGACATTGCAGCAAGTTC
GAGTCATTTATGCTCGAACTTTTGTTTATTTCTGGTTTGATGTAGATTCTCAGTGA
AA sequence
>Potri.001G025601.1 pacid=42792203 polypeptide=Potri.001G025601.1.p locus=Potri.001G025601 ID=Potri.001G025601.1.v4.1 annot-version=v4.1
MEEQGKQKKKNKKPLSSSFCPINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWCYLACHPRLWLRVEQSAKDLSEPGVFPSIEKAVSAARPGDTILIAAG
GRHLASNIQINKPLCLIGGGELPDETTLLCSRGSDSALEFINTCKLANLTVKAELGCCLLHRSGRLTIDSCILQCEASPLDYLSCPIISTAGGNEVVSSA
VKTKGNRVSVSQTRIEGGAKAVLTSGDLTLQQVRVIYARTFVYFWFDVDSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54480 SKP5, SKIP5 SKP1/ASK-interacting protein 5... Potri.001G025601
[exp]
0 1
AT4G27745 Yippee family putative zinc-bi... Potri.015G009200
[exp]
6.16 0.8784
AT2G35680 Phosphotyrosine protein phosph... Potri.001G154700
[exp]
6.32 0.8221
AT3G49060 U-box domain-containing protei... Potri.012G143100
[exp]
10.39 0.8067
AT2G20740 Tetraspanin family protein (.1... Potri.019G101800
[exp]
11.83 0.8326
AT2G46550 unknown protein Potri.005G071400
[exp]
15.49 0.8358
AT1G56580 SVB SMALLER WITH VARIABLE BRANCHES... Potri.005G011200
[exp]
16.70 0.8221
Potri.016G052100
[exp]
19.07 0.8258
AT3G10915 Reticulon family protein (.1.2... Potri.019G057400
[exp]
23.32 0.7500
AT3G13340 Transducin/WD40 repeat-like su... Potri.001G471800
[exp]
23.87 0.7610
AT4G10150 RING/U-box superfamily protein... Potri.014G076800
[exp]
24.24 0.8279

Potri.001G025601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.