Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20710 1123 / 0 BGAL7 beta-galactosidase 7 (.1) AT1G31740 1085 / 0 BGAL15 beta-galactosidase 15 (.1) AT2G28470 864 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 790 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 779 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G32810 748 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 700 / 0 BGAL5 beta-galactosidase 5 (.1) AT3G52840 697 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G63810 691 / 0 BGAL10 beta-galactosidase 10 (.1) AT4G26140 686 / 0 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025800 [exp] 1422 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.006G139100 [exp] 944 / 0 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.018G062800 [exp] 934 / 0 AT5G20710 914 / 0.0 beta-galactosidase 7 (.1) Potri.009G012400 [exp] 862 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 793 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 792 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 780 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 777 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 776 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015625 [exp] 794 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 793 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 791 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 772 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10016655 [exp] 771 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10041798 [exp] 762 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10022645 [exp] 736 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10006733 [exp] 733 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10003343 [exp] 720 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10028348 [exp] 712 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G025701.1 pacid=42793523 polypeptide=Potri.001G025701.1.p locus=Potri.001G025701 ID=Potri.001G025701.1.v4.1 annot-version=v4.1 ATGTCTTCTTCAGGGATTCTTGCTCTCTTCATCGTTTGTTTTTGCACGTCTGGCCGCCTGTGGGCTACTGCGACTCAGGTGACTTATGATAATAGGGCCA TCATTATTGATGGCAAGCACAGAGTTCTTGTGTCTGGATCAATCCATTACCCCAGAAGCACTACACAGATGTGGCCGGATTTGATGAAGAAATCAAGGGA AGGTGGGCTAGATGCCATTGAAACTTATGTTTTCTGGAATGCTCATGAACCTGCTCGTCGGCAATATGATTTTAGTGGCAATCTAGACCTTGTAAGGTTT CTTAAAGCAATCCAAGATGAAGGACTTTACGCTGTTCTTCGTATTGGACCGTACGTTTGTGCTGAATGGAATTATGGTGGCTTTCCTGTGTGGTTGCATA ATATGCCTGGTATTCAGATGAGAACTGATAATGATGTTTTCAAGAATGAGATGCAAAACTTCACTACATTGATCGTCGATATGGTGAAACGAGAAAACCT TTTTGCATCCCAAGGAGGTCCTGTTATTCTTGCTCAGATTGAGAACGAATATGGCAATGTCATGTCATCTTATGGAGATGAAGGGAAGGCATACATGAAT TGGTGCGCAAACATGGCTCAATCTCTTGACATTGGAGTTCCATGGCTCATGTGCCAGCAGGATGATGCTCCAGAACCAATGATCAGTACATGCAATGGTT GGTATTGTGATCAATACCAACCTAGGAGATCAAATATTCCTAAAATGTGGACGGAGAATTGGACTGGCTGGTATAAGAATTGGGGTGGTAAAGATCCACA CAGGACTGCTGAGGATCTTGCTTTTGCTGTAGCAAGATTTTATCAATTGGGAGGCACTTTTCAAAACTACTATATGTACCATGGTGGAACTAATTTTGGT CGATCAGCCGGTGGTCCATACATTACTACATCCTATGATTATGACGCACCACTGGATGAATATGGAAACCTGAACCAACCAAAATGGGGGCATTTGAAGC AACTTCATGACCTATTGCATTCCATGGAGGATATTCTCACAACAGGGAACGTTTCCTCTGTCGATTTGGGTGATGATTCTGTTTGGGGCACTATATATTC AAATGAAGGTGGATCAAGCTGTTTTTTGGCCAATGTAGACCAAGGGACTGATAAAACAATCAATTTCCAAGGCATAAATTATACAGTACCAGCATGGTCT GTTAGTATACTTCCAGATTGTCAAAATGTGTCTTACAATACAGCCAAGGTATCTACTCAAACATCAGTGATGGTCAAGAAAGCAAACGTCGCCGAAGATG AGCCCATTTCTCTTAAATGGTCATGGAGACCTGAAATGGACGATAAGACTATACTTCTTGGAAAGGGAGATGTCACCATTAATCAGATTCTTGACCAAAA AGAGGCAGCGAATGATTTGAGTGATTATTTATTCTACATGACAAGTATAAATCTTAAAAAAGATGATCCAGTCTGGAGTTATAATATGACACTCCGAGTT AAAAGTAGCGGCCAAATTCTTCATGCCTTTGTTAATGGAGAACTTATTGGTTCTCAATGGTCTAAGAATGGCGGTGAGAGTTTTGTTTTTGAGCAAAACG TGAAATTGAATCATAAGAAAAACACAATTAGTCTGCTCAGCGCTACAGTTGGATTCACGAACTATGGAGCCAATTTTGATCTGGTACCATCTGGGATTAC TGGTCCAGTCGAGCTGATTGGCTACCATGGTGATGATGAGACAGTTGCCAAGGATTTATCATCACAAAAATGGTCATACAAGATTGGATTGGAAGGTTTG AATCAAGAACTCTACAGCAGTCAATCTCTTAAGTGGCAAGAAGATAGCTTCCCTGTAAACAGGACCTTAACTTGGTACAAGACTGTGTTCAAAGCTCCTT TGGGAACAGATCCTGTTGTGGTAGATTTACTTGGCATGGGAAAAGGTCTAGCTTGGGTTAATGGTAACAGCATTGGTCGATATTGGCCGAGTTTCATAGC TGAGGGTGATTGCAATCTTGAACCATGTGATTATCGAGGTTCATACGACAGCAGCAAGTGTCTCTCTAACTGTGGCCATCCAACTCAAAGATGGTATCAT GTCCCAAGATCATTCCTTAATGACACTGGCGATAACACATTGGTCTTGTTTGAAGAGTTTGGTGGAAACCCTTCATCGGTTAATTTCCGAACTATTGCTA TTGGATCAGCATGCATCAGTGCTGAGGAGAACAGGAAGATCGAGCTCTCATGCCAAGGAAGACCGATTTCTGCTGTTAAATTTGCTAGCTTCGGTAATCC ACAAGGGTCTTGTGGATCTTTTGTGAAGGGATTTTGTGAGGGATCAAAGGATGCATTATCTGTTGTCGAAAAGGCATGTGTTGGCCAGGAGTCGTGCACC ATTGATGTTTCCGAAGATACATTTGGCTCGACTACCTGTGGTGATGATGTTATCAAGACCCTTTCTGTGGAGGCTATTTGTTAG
AA sequence Show only first row Show all	>Potri.001G025701.1 pacid=42793523 polypeptide=Potri.001G025701.1.p locus=Potri.001G025701 ID=Potri.001G025701.1.v4.1 annot-version=v4.1 MSSSGILALFIVCFCTSGRLWATATQVTYDNRAIIIDGKHRVLVSGSIHYPRSTTQMWPDLMKKSREGGLDAIETYVFWNAHEPARRQYDFSGNLDLVRF LKAIQDEGLYAVLRIGPYVCAEWNYGGFPVWLHNMPGIQMRTDNDVFKNEMQNFTTLIVDMVKRENLFASQGGPVILAQIENEYGNVMSSYGDEGKAYMN WCANMAQSLDIGVPWLMCQQDDAPEPMISTCNGWYCDQYQPRRSNIPKMWTENWTGWYKNWGGKDPHRTAEDLAFAVARFYQLGGTFQNYYMYHGGTNFG RSAGGPYITTSYDYDAPLDEYGNLNQPKWGHLKQLHDLLHSMEDILTTGNVSSVDLGDDSVWGTIYSNEGGSSCFLANVDQGTDKTINFQGINYTVPAWS VSILPDCQNVSYNTAKVSTQTSVMVKKANVAEDEPISLKWSWRPEMDDKTILLGKGDVTINQILDQKEAANDLSDYLFYMTSINLKKDDPVWSYNMTLRV KSSGQILHAFVNGELIGSQWSKNGGESFVFEQNVKLNHKKNTISLLSATVGFTNYGANFDLVPSGITGPVELIGYHGDDETVAKDLSSQKWSYKIGLEGL NQELYSSQSLKWQEDSFPVNRTLTWYKTVFKAPLGTDPVVVDLLGMGKGLAWVNGNSIGRYWPSFIAEGDCNLEPCDYRGSYDSSKCLSNCGHPTQRWYH VPRSFLNDTGDNTLVLFEEFGGNPSSVNFRTIAIGSACISAEENRKIELSCQGRPISAVKFASFGNPQGSCGSFVKGFCEGSKDALSVVEKACVGQESCT IDVSEDTFGSTTCGDDVIKTLSVEAIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025701 [exp]	0	1
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.002G172900 [exp]	7.61	0.7134
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	10.09	0.8002	AMYVM1.2
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056000 [exp]	10.09	0.7966
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G118035 [exp]	30.38	0.7580
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056500 [exp]	34.72	0.7661
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	42.72	0.7370
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	44.49	0.7539
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074700 [exp]	47.74	0.7653
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013800 [exp]	71.37	0.7412
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056258 [exp]	78.38	0.7372

Compare expression of checked genes

Potri.001G025701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.