Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20710 1097 / 0 BGAL7 beta-galactosidase 7 (.1) AT1G31740 1065 / 0 BGAL15 beta-galactosidase 15 (.1) AT2G28470 834 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 762 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 756 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G32810 733 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 676 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G63810 674 / 0 BGAL10 beta-galactosidase 10 (.1) AT3G52840 660 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 654 / 0 BGAL4 beta-galactosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025701 [exp] 1371 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.018G062800 [exp] 902 / 0 AT5G20710 914 / 0.0 beta-galactosidase 7 (.1) Potri.006G139100 [exp] 893 / 0 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.009G012400 [exp] 835 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 771 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 768 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 764 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.011G044300 [exp] 763 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.005G232600 [exp] 756 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015625 [exp] 778 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 773 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 768 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 748 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10016655 [exp] 748 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10041798 [exp] 739 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10022645 [exp] 736 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 724 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10006733 [exp] 721 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10028348 [exp] 690 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G025800.1 pacid=42789057 polypeptide=Potri.001G025800.1.p locus=Potri.001G025800 ID=Potri.001G025800.1.v4.1 annot-version=v4.1 ATGCATCCTTCAAAGGTATTGCTCGCCACCCTTTTCTTTTTCACGCTCGCTCCTTGGGCTACTGCTAGTAAGGTTACCTACGATGGCAGAGCAATCATCA TCGATGGCAAACATAGGCTTCTGGTGTCTGGTTCAATCCATTATCCCAGGAGCACTGCCCAGATGTGGCCGGATTTGGTTAAGAAATCCAGGGAAGGTGG ACTGGACGCCATTGAAACCTATGTTTTCTGGGATTCTCATGAACCTGCTCGTCGGGAATATGATTTCAGTGGCAACCTGGACCTTATAAGGTTTCTTAAG ACAATCCAAGATGAAGGGCTCTATGCTGTTCTTCGTATTGGACCGTATGTTTGTGCTGAATGGAATTATGGTGGGCTCCCTGTATGGTTGCATAACATGC CTGGTGTTCAGATGCGAACTGCTAATGATGTTTTCATGAATGAGATGAGGAATTTCACTACATTGATAGTTAATATGGTGAAGCAAGAGAATCTTTTTGC ATCACAAGGAGGTCCTGTTATTCTTGCCCAGATTGAGAACGAATATGGCAACGTCATGTCGTCTTATGGAGATGAAGGGAAGGCGTATATTGAATGGTGT GCAAACATGGCTCAGTCACTTCACATTGGAGTTCCATGGCTCATGTGCCAGCAGTCCGATGCTCCAGAACCGATGATCAACACATGCAATGGCTGGTACT GTGACCAATTCACTCCTAATAGGCCAACTAGTCCTAAAATGTGGACTGAGAATTGGACCGGCTGGTTTAAGAGCTGGGGTGGTAAAGATCCACACAGAAC TGCTGAGGATCTTGCTTTTTCTGTAGCAAGATTTTACCAACTTGGAGGCACTTTTCAAAACTATTATATGTATCATGGTGGAACCAATTTCGGTAGAACA GCCGGCGGTCCATATATCACTACATCTTATGATTATGATGCACCGCTAGATGAATATGGGAATCTGAATCAACCAAAATGGGGGCATTTGAAGGAGCTTC ATGATGTGTTGCACTCCATGGAAGATACTCTTACACGAGGGAACATCTCCTCAGTTGACTTTGGCAATTCTGTCTCGGGCACTATTTATTCAACTGAGAA GGGATCGAGCTGCTTTTTGACCAATACAGACTCTAGAAACGACACAACAATCAATTTTCAAGGCTTAGACTATGAAGTGCCAGCATGGTCTGTTAGTATA CTGCCTGATTGTCAAGATGTGGTGTACAATACGGCTAAGGTTTCAGCTCAAACATCTGTGATGGTGAAGAAAAAAAATGTTGCTGAGGATGAGCCCGCTG CTCTTACATGGTCATGGAGGCCCGAGACGAACGATAAATCGATTCTTTTTGGAAAAGGAGAGGTCTCGGTTAATCAGATTCTTGACCAGAAAGATGCGGC AAATGATCTGAGTGATTATCTCTTCTACATGACAAGTGTGAGTCTTAAGGAAGATGATCCCATCTGGGGGGACAATATGACTCTTCGGATTACAGGCAGT GGTCAAGTACTTCATGTATTTGTTAATGGGGAATTTATAGGTTCTCAATGGGCTAAGTATGGAGTTTTCGATTATGTTTTCGAGCAACAAATAAAATTAA ACAAGGGGAAAAACACCATTACTTTGCTCAGTGCTACGGTTGGATTTGCGAACTATGGTGCTAATTTTGACTTGACACAAGCTGGTGTTCGTGGCCCTGT GGAGCTTGTTGGATACCATGACGATGAAATAATAATTAAAGATTTATCTTCACACAAATGGTCCTATAAGGTTGGATTGGAAGGCTTGCGTCAAAACCTT TATAGCTCTGATTCTTCGAAATGGCAACAAGATAATTACCCCACGAACAAGATGTTTACGTGGTATAAGGCTACCTTCAAAGCTCCTCTGGGAACAGATC CAGTTGTGGTGGATTTACTTGGCCTGGGAAAAGGTCTAGCTTGGGTTAATGGTAACAGCATTGGTCGATACTGGCCAAGTTTCATTGCTGAGGATGGATG CAGTCTTGATCCATGCGATTATCGAGGTTCCTACGATAACAACAAATGTGTAACCAATTGTGGCAAACCAACTCAAAGATGGTATCATGTTCCTAGATCC TTCCTTAACAACGAAGGTGATAACACTTTGGTCTTGTTCGAGGAATTTGGTGGAGACCCTTCTTCGGTTAATTTCCAAACTACTGCAATCGGATCAGCAT GCGTCAATGCTGAGGAGAAGAAGAAAATCGAGCTCTCATGCCAAGGAAGGCCAATTTCTGCAATTAAATTCGCCAGCTTCGGCAATCCACTAGGGACATG CGGATCTTTTTCGAAGGGCACTTGTGAAGCCTCGAATGATGCCTTATCTATTGTCCAAAAGGCATGTGTTGGCCAGGAGTCTTGCACCATTGATGTTTCT GAAGATACATTTGGCTCGACTACCTGTGGTGACGATGTCATTAAGACCCTTGCTGTGGAGGCTATTTGTTAG
AA sequence Show only first row Show all	>Potri.001G025800.1 pacid=42789057 polypeptide=Potri.001G025800.1.p locus=Potri.001G025800 ID=Potri.001G025800.1.v4.1 annot-version=v4.1 MHPSKVLLATLFFFTLAPWATASKVTYDGRAIIIDGKHRLLVSGSIHYPRSTAQMWPDLVKKSREGGLDAIETYVFWDSHEPARREYDFSGNLDLIRFLK TIQDEGLYAVLRIGPYVCAEWNYGGLPVWLHNMPGVQMRTANDVFMNEMRNFTTLIVNMVKQENLFASQGGPVILAQIENEYGNVMSSYGDEGKAYIEWC ANMAQSLHIGVPWLMCQQSDAPEPMINTCNGWYCDQFTPNRPTSPKMWTENWTGWFKSWGGKDPHRTAEDLAFSVARFYQLGGTFQNYYMYHGGTNFGRT AGGPYITTSYDYDAPLDEYGNLNQPKWGHLKELHDVLHSMEDTLTRGNISSVDFGNSVSGTIYSTEKGSSCFLTNTDSRNDTTINFQGLDYEVPAWSVSI LPDCQDVVYNTAKVSAQTSVMVKKKNVAEDEPAALTWSWRPETNDKSILFGKGEVSVNQILDQKDAANDLSDYLFYMTSVSLKEDDPIWGDNMTLRITGS GQVLHVFVNGEFIGSQWAKYGVFDYVFEQQIKLNKGKNTITLLSATVGFANYGANFDLTQAGVRGPVELVGYHDDEIIIKDLSSHKWSYKVGLEGLRQNL YSSDSSKWQQDNYPTNKMFTWYKATFKAPLGTDPVVVDLLGLGKGLAWVNGNSIGRYWPSFIAEDGCSLDPCDYRGSYDNNKCVTNCGKPTQRWYHVPRS FLNNEGDNTLVLFEEFGGDPSSVNFQTTAIGSACVNAEEKKKIELSCQGRPISAIKFASFGNPLGTCGSFSKGTCEASNDALSIVQKACVGQESCTIDVS EDTFGSTTCGDDVIKTLAVEAIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025800 [exp]	0	1
					Potri.004G018900 [exp]	1.41	0.9100
AT1G34580			Major facilitator superfamily ...		Potri.002G096000 [exp]	8.48	0.7984	HT1.2
					Potri.005G071951 [exp]	15.09	0.7088
					Potri.014G003501 [exp]	16.97	0.6977
					Potri.002G020850 [exp]	20.83	0.6713
AT1G78400			Pectin lyase-like superfamily ...		Potri.009G038100 [exp]	26.98	0.7762
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	27.65	0.6427
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	31.12	0.6330
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.001G432960 [exp]	32.86	0.6320
AT2G48020			Major facilitator superfamily ...		Potri.014G136532 [exp]	48.83	0.7713

Compare expression of checked genes

Potri.001G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.