Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14180 186 / 1e-54 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT1G54060 114 / 3e-28 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G58630 103 / 8e-25 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 99 / 5e-24 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 97 / 3e-23 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 74 / 1e-14 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 74 / 4e-14 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24490 62 / 2e-10 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 59 / 2e-09 Trihelix Homeodomain-like superfamily protein (.1) AT2G44730 56 / 2e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126206 [exp] 353 / 7e-121 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 352 / 5e-120 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 119 / 4e-31 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 119 / 1e-30 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 111 / 4e-28 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G179800 [exp] 82 / 5e-17 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 80 / 3e-16 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G028400 [exp] 74 / 2e-14 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 73 / 5e-14 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013179 [exp] 149 / 7e-41 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 145 / 9e-40 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 119 / 5e-31 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 120 / 6e-31 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 116 / 6e-30 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 112 / 1e-29 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 119 / 3e-29 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029889 [exp] 112 / 6e-28 AT3G14180 147 / 1e-40 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015281 [exp] 74 / 7e-16 AT3G58630 79 / 2e-18 sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 78 / 1e-15 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G026000.3 pacid=42787849 polypeptide=Potri.001G026000.3.p locus=Potri.001G026000 ID=Potri.001G026000.3.v4.1 annot-version=v4.1 ATGGATGATGATGATGATATACAGTCACACTCAAACACCACCGAGTCTTCCTCACCGTCACCGTCACCACCGGACGGAAGAATCACCGTGACTGTTCCCG CTACCGCCACCGTGCCTCCAACCCCGCCGCCACAGCAGACTGACAACAGCTTAGCACTTGTTTTGCCGATGAAGTCGAAAGCGAACGGAAGCGGAGGAGG AGGAAGAGAGGATTGCTGGAGCGAAGGAGCCACGGCCGTGTTGATTGATGCTTGGGGAGAAAGGTATTTAGAGTTGAGCAGAGGGAACTTGAAGCAGAAG CACTGGAAAGATGTGGCTGAAATTGTAAGTAGCAGAGAAGATTATTCAAAATCTGCGAAAACTGATATCCAATGTAAGAATAGAATTGATACTGTGAAGA AGAAGTACAAATTGGAGAAAGCGAAAATGGCTTCTGGCGGTGGGGTAAGTTCTTGGCCTTTTTTTGATCCTTTGGATAGACTAATTGGGTCTACTGCGAG GGTTCCTGCTGTTGCTAGTGGTAGTAAATTTCCAGTTGCGATTCCTGTTAGGGTTCGGAGTAGTAGTAGGAGGGGCGGGACTAACCAGTATCATTTCAGG AGGAATCAGAATATGAAGGCTCGGATCCGGAAATGGGGTAAGGATGAGGACGACGACGACGACGACGAGGATGAAGAGGAGGAGGAGGAGGAGGAGGAAG AGGAGGAGGAAGAGGATGGTAGTTTTCCGCCGCAGAAGAAGAGAAGAGTGGTGGTGGAGAGGGAAGTGGGTGGGAAAGGAGGAGGAGGAGGGAAGGAAAA GAAAGGAGGGTGGGGGAATTCGATTAGGATGTTGACGCAAGCAATGTTGAAGTTTGGGGAAGCTTATGAGCAAGCTGAGACTGCCAAGTTGCAGCAAGTG GTGGAGATGGAGAAGACGAGGATGAAGTTCGCGAAAGAGTTGGAGTTGCAAAGGATGCAGTTTTTTATGCAGACACAGATGGAGATTTCGCAGTTGAAGA ATGGGAGAAAGGGAGGGAGTGCTAGCGGCAATCACCACCACCACCACCACCACCACCATACCGGTAACAATATTACTGCTAGCAATAATGTTAACAATAG TGATAGTGATAATTAA
AA sequence Show only first row Show all	>Potri.001G026000.3 pacid=42787849 polypeptide=Potri.001G026000.3.p locus=Potri.001G026000 ID=Potri.001G026000.3.v4.1 annot-version=v4.1 MDDDDDIQSHSNTTESSSPSPSPPDGRITVTVPATATVPPTPPPQQTDNSLALVLPMKSKANGSGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQK HWKDVAEIVSSREDYSKSAKTDIQCKNRIDTVKKKYKLEKAKMASGGGVSSWPFFDPLDRLIGSTARVPAVASGSKFPVAIPVRVRSSSRRGGTNQYHFR RNQNMKARIRKWGKDEDDDDDDEDEEEEEEEEEEEEEEDGSFPPQKKRRVVVEREVGGKGGGGGKEKKGGWGNSIRMLTQAMLKFGEAYEQAETAKLQQV VEMEKTRMKFAKELELQRMQFFMQTQMEISQLKNGRKGGSASGNHHHHHHHHHTGNNITASNNVNNSDSDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	1.41	0.9061
AT3G49601			unknown protein		Potri.006G233000 [exp]	2.44	0.8891
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	3.87	0.8568
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	4.24	0.8178
AT5G65540			unknown protein		Potri.007G011800 [exp]	5.29	0.8276
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	6.48	0.8783	HAF902
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	7.48	0.8471
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	9.16	0.8610
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	11.22	0.8567
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	12.24	0.8206	Pt-TOP1.2

Compare expression of checked genes

Potri.001G026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.