Plant FIBer expression Database

Potri.001G026300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54470 711 / 0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G198501
[exp]
849 / 0 AT3G54470 686 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Potri.T125906
[exp]
848 / 0 AT3G54470 685 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024166
[exp]
781 / 0 AT3G54470 774 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Lus10039539
[exp]
777 / 0 AT3G54470 776 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0533 PRTase-like PF00156 Pribosyltran Phosphoribosyl transferase domain
CL0036 TIM_barrel PF00215 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family
Representative CDS sequence
>Potri.001G026300.1 pacid=42788875 polypeptide=Potri.001G026300.1.p locus=Potri.001G026300 ID=Potri.001G026300.1.v4.1 annot-version=v4.1
ATGATAACTTTCCTTCCTTACATAAACACTTCCGTTTCCACTCCAATACTGACACTCGCTCACTCTTTCCCTCGCTTCTCTCACCGCCATCACCGCCACA
AGATGTCTTCTATGGAATCCCTAATTCTCCAACTCCATGAAATATCCGCCGTCAAATTCGGCTCCTTCAAGCTCAAGTCCGGTATAACCTCCCCAGTCTA
CATCGATCTCCGCCTCATAATCTCATACCCCTCCCTCCTCCGCCACATTTCCCAAACCCTAATCACCTCCATCCCGACCACCACCACTTTCGACCTCATA
TGCGGCGTTCCCTACACAGCTCTTCCAATCGCCACCACCGTATCAATCTCCAACGACATCCCCATGGTAATGCGCAGGAAAGAAGTGAAAGATTACGGTA
CTTCGAAGGCTATTGAGGGAAATTACCAAAAGGACCAGGCTTGTTTGATAATTGAGGATTTAGTTACTAGTGGGGCTTCTGTTCTTGAAACGGCAGCGCC
TTTGAGGGCGGCGGGGTTGAAGGTGACGGACGCGGTGGTTTTGATTGATAGGGAACAAGGAGGGAGGGAGAATTTGGAGGAGAATGGGATTAAGTTACAT
GCCATTATTAAGTTGAGTGAGATGGTTAGGGTTTTGAGGGATAAGGGGAAGTTGGAAGAGGAAACGGAGAAGGGAGTTTTGAGGTTTTTGGAGGAGAATA
GAAGGGTTGGTGTTGTTAAAGCGGTGGAGAAGAGTGTTAGGGTCAAGAGTTTAGGGTTTGAGGAGAGAGCGAAGTTAGCAAAGAATGAAATGGGGAAGAG
GTTGTTTGAGGTTATGGTTAAAAAGGAGAGTAATTTATGTGTTGCTGCTGATGTTGGTACTGCTAAGGAATTGCTGGAGCTTGCTGAGAAAGTTGGACAG
GAGATATGTTTGTTGAAAACCCATGTTGATATTTTGCCTGATTTCACTCCTGATTTTGGAGCAAAACTTCGTGCGATTGCAGATAAATACAATTTCTTAA
TTTTTGAAGATCGTAAGTTTGCAGACATTGGTAACACAGTGACTATGCAGTATGAAGGGGGCATCTTCCGTATACTGGATTGGGCTGATATAGTTAATTG
TCACATTATTTCTGGTCCTGGAATTGTGGATGGATTGAAATTGAAGGGTTTGCCTCGTGGGAAGGGCCTCTTGCTGCTTGCTGAAATGAGTTCAGCTGGT
AACTTTGCTAAGGGAGATTACACAGCTGCGGCGGTAAAAATTGCTGAAGAACATTCTGATTTTGTGATGGGCTTCATCTCAGTAAATCCAGCTTCATGGC
CAGGTGCACCAGTAAATCCAGCATTTATTCAAGCAACCCCTGGAGTTCAAATGGTCACTGGTGGTGATGCCCTTGGACAGCAGTATAATACCCCATATTC
TGTCATCTATGACAGGGGTAGTGATATCATAATCGTGGGACGTGGGATTATAAAGGCAGCAAATCCTGCAGAGGCAGCTCGCGAATACCGCCTTCAAGGA
TGGGATGCATACTTGGCTAAATGCACATGA
AA sequence
>Potri.001G026300.1 pacid=42788875 polypeptide=Potri.001G026300.1.p locus=Potri.001G026300 ID=Potri.001G026300.1.v4.1 annot-version=v4.1
MITFLPYINTSVSTPILTLAHSFPRFSHRHHRHKMSSMESLILQLHEISAVKFGSFKLKSGITSPVYIDLRLIISYPSLLRHISQTLITSIPTTTTFDLI
CGVPYTALPIATTVSISNDIPMVMRRKEVKDYGTSKAIEGNYQKDQACLIIEDLVTSGASVLETAAPLRAAGLKVTDAVVLIDREQGGRENLEENGIKLH
AIIKLSEMVRVLRDKGKLEEETEKGVLRFLEENRRVGVVKAVEKSVRVKSLGFEERAKLAKNEMGKRLFEVMVKKESNLCVAADVGTAKELLELAEKVGQ
EICLLKTHVDILPDFTPDFGAKLRAIADKYNFLIFEDRKFADIGNTVTMQYEGGIFRILDWADIVNCHIISGPGIVDGLKLKGLPRGKGLLLLAEMSSAG
NFAKGDYTAAAVKIAEEHSDFVMGFISVNPASWPGAPVNPAFIQATPGVQMVTGGDALGQQYNTPYSVIYDRGSDIIIVGRGIIKAANPAEAAREYRLQG
WDAYLAKCT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54470 uridine 5'-monophosphate synth... Potri.001G026300
[exp]
0 1
AT3G53580 diaminopimelate epimerase fami... Potri.006G102700
[exp]
7.74 0.8668
AT1G52380 NUP50 (Nucleoporin 50 kDa) pro... Potri.003G056400
[exp]
8.30 0.8193
AT1G72040 P-loop containing nucleoside t... Potri.013G109400
[exp]
19.28 0.8665
AT4G36580 AAA-type ATPase family protein... Potri.007G023900
[exp]
25.45 0.8340
AT5G64670 Ribosomal protein L18e/L15 sup... Potri.001G324300
[exp]
33.19 0.8213
AT3G46740 MAR1, TOC75-III... MODIFIER OF ARG1 1, translocon... Potri.001G072800
[exp]
44.63 0.8315 Pt-TOC75.2
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Potri.010G023100
[exp]
50.73 0.8246 Pt-CARB.1
AT4G10070 KH domain-containing protein (... Potri.019G072500
[exp]
54.44 0.8064
AT1G65030 Transducin/WD40 repeat-like su... Potri.012G107400
[exp]
55.58 0.8265
AT3G17970 ATTOC64-III translocon at the outer membra... Potri.015G038600
[exp]
61.08 0.7876 AMI3,TOC64.2

Potri.001G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.