Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07940 210 / 6e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G21160 160 / 6e-47 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 156 / 1e-45 AGD13 ARF-GAP domain 13 (.1) AT5G54310 110 / 3e-27 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 104 / 1e-26 AGD15 ARF-GAP domain 15 (.1) AT5G61980 92 / 8e-21 AGD1 ARF-GAP domain 1 (.1) AT2G37550 90 / 2e-20 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT2G35210 89 / 3e-20 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT5G46750 89 / 8e-20 AGD9, AGD8 ARF-GAP domain 9 (.1) AT3G53710 89 / 1e-19 AGD6 ARF-GAP domain 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198301 [exp] 389 / 1e-134 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 389 / 1e-134 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 162 / 9e-48 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 160 / 6e-47 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G044100 [exp] 110 / 2e-27 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 109 / 4e-27 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 109 / 8e-27 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 104 / 3e-25 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 94 / 9e-23 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002760 [exp] 250 / 2e-77 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 243 / 1e-76 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 242 / 4e-76 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 239 / 1e-73 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038539 [exp] 154 / 5e-45 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10023265 [exp] 154 / 1e-44 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10027249 [exp] 108 / 6e-28 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 105 / 1e-25 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 98 / 6e-23 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 98 / 7e-23 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.001G026400.3 pacid=42793032 polypeptide=Potri.001G026400.3.p locus=Potri.001G026400 ID=Potri.001G026400.3.v4.1 annot-version=v4.1 ATGCCTATCAGACACGAGAATTCCGAAGGATCTGCCCCTTGTCCAGATGATCTCTTATGTTCGAACAAACAAAGTTGCAGCAACGGAAAAGATCAACTGA AATCTTCTGGATCGGCTTCCAGTCCAGATGATCTTTTAAATCCAGACCAACAAAGTTGCAGCAGCAGAAAAGTTCAGCGGAAACCTTCCGGATTGGCTCC TTGTCTAAATGATCTCGTACGTTCAGGCAAACAAAGTTGCAGCAGCAGGAAAGATAAACAGAAATCTCCTGGTCCACTAAAAAGACTGGAGAGATTGCTA AGTCAATCAGGAAACAAGACTTGTGCCGATTGTGGATCTCCAGATCCAAAATGGGTGTCATTAAGTTATGGAGTTTTTATTTGTATCAAGTGTTCAGGCG TTCATAGAAGCCTTGGGGTACATCTATCGAAGGTTCTATCAATCAAGCTAGATGAATGGACAGATGAACAGGTGAACGCTCTGATAGATTTGGGTGGCAA TACTGCTGCAAACAAGAAATATGAAGCTTCTATGCCCGACGATTATAGAAAACCAAGACCAGATGCCTCTACAGAGGAGCGTTATGATTTTATTAGGAGA AAATATGAGCTGAAGGAATTTTCGAACTGTGATGAACAAATGTCCAGCCCATTTCCAGGTTCTATAAGTTCATTACCCACTCCTTCAAATAATTGTCCTT CCCAAGACAAGAAACAGTATGAAAAACAAGCAACCAGGCATCGTATTGGGAATGCATTTCGTAACAGCTGGGGAAGAAAAGACTCCGAGCACAAGCACAC AAAAAAGAGCTACCTCTTTGGCAGGTATGGTTGA
AA sequence Show only first row Show all	>Potri.001G026400.3 pacid=42793032 polypeptide=Potri.001G026400.3.p locus=Potri.001G026400 ID=Potri.001G026400.3.v4.1 annot-version=v4.1 MPIRHENSEGSAPCPDDLLCSNKQSCSNGKDQLKSSGSASSPDDLLNPDQQSCSSRKVQRKPSGLAPCLNDLVRSGKQSCSSRKDKQKSPGPLKRLERLL SQSGNKTCADCGSPDPKWVSLSYGVFICIKCSGVHRSLGVHLSKVLSIKLDEWTDEQVNALIDLGGNTAANKKYEASMPDDYRKPRPDASTEERYDFIRR KYELKEFSNCDEQMSSPFPGSISSLPTPSNNCPSQDKKQYEKQATRHRIGNAFRNSWGRKDSEHKHTKKSYLFGRYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.001G026400 [exp]	0	1
AT5G02780		GSTL1	glutathione transferase lambda...		Potri.010G214800 [exp]	13.92	0.7425
AT3G58130			N-acetylglucosaminylphosphatid...		Potri.012G041700 [exp]	15.74	0.7642
AT3G15395			unknown protein		Potri.001G402000 [exp]	31.87	0.7332
AT5G18920			Cox19-like CHCH family protein...		Potri.010G028000 [exp]	35.72	0.7159
AT1G07080			Thioredoxin superfamily protei...		Potri.006G103000 [exp]	35.94	0.6998
AT1G01230			ORMDL family protein (.1)		Potri.002G174400 [exp]	42.30	0.7185
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	45.82	0.7094
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G081600 [exp]	47.83	0.7048
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.019G038400 [exp]	48.23	0.7135
AT1G01910			P-loop containing nucleoside t...		Potri.002G152500 [exp]	66.16	0.6940

Compare expression of checked genes

Potri.001G026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.