Plant FIBer expression Database

Potri.001G026501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G026501.1 pacid=42790040 polypeptide=Potri.001G026501.1.p locus=Potri.001G026501 ID=Potri.001G026501.1.v4.1 annot-version=v4.1
ATGAAATCATTGTGCTCATTTGAGTTGTTCTCAAGGTTTGCTCACTTAAGTTTCTTGACCTACCCATCTGATTTTCAATGTCCTCAAGTTTCTTCAGATT
TTCCTGTTATTTTTCATATCCTGTACAAGATTTTTGTTGAGAAGGGTTTCTATTTACTCAGCAGAGTGATAGTTGCACATTTGGTACTCGCGCTACATTA
TCATCAAGAAAGCTGCAGAGCCCTGAAGATTTTGCACCAACCGAACAAAATTCGTCAGGATACAAAATTTGGTTGCATCGCTGGTGTTGGCGTTATAAAA
TCATACAAGCTATATACAATTCGTTAA
AA sequence
>Potri.001G026501.1 pacid=42790040 polypeptide=Potri.001G026501.1.p locus=Potri.001G026501 ID=Potri.001G026501.1.v4.1 annot-version=v4.1
MKSLCSFELFSRFAHLSFLTYPSDFQCPQVSSDFPVIFHILYKIFVEKGFYLLSRVIVAHLVLALHYHQESCRALKILHQPNKIRQDTKFGCIAGVGVIK
SYKLYTIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G026501
[exp]
0 1
AT1G22410 Class-II DAHP synthetase famil... Potri.002G099200
[exp]
2.44 0.8913
AT3G04810 ATNEK2 NIMA-related kinase 2 (.1.2) Potri.002G049400
[exp]
3.00 0.8853
AT5G41800 Transmembrane amino acid trans... Potri.003G138100
[exp]
6.70 0.8625
AT4G35550 HD HB-4, WOX13, AT... WUSCHEL related homeobox 13 (.... Potri.002G008800
[exp]
7.34 0.8625 HB1.3
AT4G17220 ATMAP70-5 microtubule-associated protein... Potri.006G018000
[exp]
7.93 0.8614
AT5G27020 unknown protein Potri.013G011950
[exp]
9.00 0.8465
AT5G13810 Glutaredoxin family protein (.... Potri.003G198100
[exp]
9.21 0.8384
AT1G08760 Plant protein of unknown funct... Potri.017G026200
[exp]
10.58 0.8544
AT4G28500 NAC ANAC073, SND2, ... SECONDARY WALL-ASSOCIATED NAC ... Potri.011G058400
[exp]
11.40 0.8435
AT5G20260 Exostosin family protein (.1) Potri.018G124945
[exp]
12.84 0.8429

Potri.001G026501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.