Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13480 726 / 0 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 115 / 8e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 102 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 102 / 4e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 94 / 2e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 97 / 3e-20 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 95 / 7e-20 TAF5 TBP-associated factor 5 (.1) AT1G11160 94 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 91 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 88 / 1e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197900 [exp] 870 / 0 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 868 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 114 / 1e-26 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.010G255400 [exp] 102 / 3e-22 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 102 / 3e-22 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 96 / 2e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 96 / 2e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 96 / 3e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 96 / 4e-20 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026837 [exp] 795 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 771 / 0 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006511 [exp] 115 / 9e-27 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 113 / 4e-26 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10021059 [exp] 102 / 2e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 96 / 3e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 100 / 4e-21 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 99 / 4e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10013452 [exp] 100 / 5e-21 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10014674 [exp] 95 / 5e-21 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G026800.1 pacid=42791189 polypeptide=Potri.001G026800.1.p locus=Potri.001G026800 ID=Potri.001G026800.1.v4.1 annot-version=v4.1 ATGATGTACGGTGGTGATCCTCAGCAACAGCAACAGCAACAGCAACACCACCACCACCAGCAGCTGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGC AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACACCAACAACAACAACAACACCACCACCACCACCAACATATGCAACATCAACCGCCACCTGGTAA TGACTTCCACCGAGGCCCCCCGCCACCGCCGATGATGCGGCAACCCTCCGCTTCATCAACAACTCTTAGTCCTCTCGATTACCACCACCAACACCACCCT CCGCAGGCCGCCCCCGGTCCTCCTCATCCTAATTACGAAGGTCATGGTGATGGTTATGGTGGAAAAAGGATGAGGAAGCTTACGCAAAGGAGAGCTGTTG ATTATACAAGCACGGTTGTTAGGTATATTCAGACTCGTATGTGGCAGAGGGACTCGAGGGACAGGACAATATTGCAACATACCCCAGCAGCTGCAATTGA TGTGTTGCCTACAGTTGCCTATTCTGATAATCCATCAACAAGCTTTGCTGCAAAATTTGTCCATACATCTCTAAACAAAAACCGTTGTTCAATTAATCAG GTTTTGTGGACTCCAAACGGGAGACGTCTAATCACAGGTTCTCAAAGTGGGGAATTCACCCTTTGGAATGGACAGTCATTTAATTTTGAAATGATTCTTC AGGCTCATGATCAAGCAATCAGGTCTATGGTATGGAGCCACAATGACAATTGGATGGTCTCCGGTGATGATGGTGGTGCAATTAAGTATTGGCAGAGCAA CATGAATAATGTTAAGGCCAATAAATCTGCTCATAAAGAATCAGTGCGAGGCTTAAGTTTCTGTAGGACAGATTTGAAGTTCTGTTCCTGCTCTGATGAC ACTACTGTTAAAGTTTGGGACTTTGCTCGGTGTCATGAAGAGCGTTCATTAACGGGCCATGGTTGGGATGTGAAGAGTGTTGATTGGCACCCTACAAAAT CTCTACTAGTGTCAGGTGGGAAAGACAACCTAGTAAAACTCTGGGATGCTAAATCTGGAAAAGAGCTTTGCTCATTTCATGGCCACAAAAATACTGTGCT TTGTGTCAAATGGAACCAAAATGGTAACTGGGTGCTGACTGCTTCAAAAGATCAAATCATCAAGCTTTATGATATAAGGGCAATGAAGGAGCTTGAATCT TTCCGTGGGCATCGGAAGGACGTGACTGCGTTGGCTTGGCATCCATTCCATGAAGAGTACTTCGTCAGTGGGAGTTACGATGGATCCATTTTCCATTGGC TTGTGGGGCATGAAACCCCTCAGATTGAAGTTTCCAGTGCTCATGATAATAGTGTTTGGGATCTTGCATGGCATCCAATCGGATATCTTCTTTGCAGTGG TAGCAATGATCACACGACAAAGTTTTGGTGCCGAAATAGGCCAGGAGACACTGCCCGTGATAAATTTAACGTGGGTCAAAACCAAGGTTATGGTGAACAA AATCCTGCCTTTGGTGGCCGCTTCCCTGGCAATTTCCCTGTACCTGAACCACCAACAACTCCAGGACCATTTCCTCCTGGATTGACTCGAAATGAAGGAA CTATTCCAGGTGTTGGAGCTGCAATGCCACTATCGATTCAATCTCTTGATGCATCCCAGGGAGAGAAGCAGCCTCTTCCTATTTCTATGCCCTTTGGATC GCCTCCTCTTCCTCCCGGTCCACATCCGTCGCTTCTTGCTGCTAATCAGCAGCAGGGATATCAACAAAATCCTCAGCAGATGCCACAACAGCAACACCAA CCACACCCTCAGCACATGCCTCCTTTGCCTATGCCGCCTCCAAATATGCAGCAGCTACAGCCTCCATCCCACGTACCCCTGCTCCCTCATATGCATCTAC CTCGCCCTCCACAAATGCCCCCTCATGGCATGCCTTCACCAATCCCATCTTCCATGCCCGGATCTTTACCTTCATCACTGCCTGGTCCAATGGGGATGCA AGGGACAATGAATCAGATGGTACCTTCATTACAACAAGGCCATTTTATGGGCATGAATCCATTGCATGCAGGATCCTTACCCACAAGTGCCGCCCCAACA GTTGGTGGGGGTTTTCCAAATGGCCTGCCAAATATGCAGGGCCCATCAAATGCAAGCGGGGGCCAAATGTATTCACAGGGTGGTCCATTCAACCGTCCAC AAGGTGGACAGATGCCAATGATGCCTGGGTTTAATCCTTATCAGTCTGGGAACCAATCTGGTATGCCTCCACCACTACCACCTGGTCCACCACCACATTC ACAGACACCTCAGTAG
AA sequence Show only first row Show all	>Potri.001G026800.1 pacid=42791189 polypeptide=Potri.001G026800.1.p locus=Potri.001G026800 ID=Potri.001G026800.1.v4.1 annot-version=v4.1 MMYGGDPQQQQQQQQHHHHQQLQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHHHHHQHMQHQPPPGNDFHRGPPPPPMMRQPSASSTTLSPLDYHHQHHP PQAAPGPPHPNYEGHGDGYGGKRMRKLTQRRAVDYTSTVVRYIQTRMWQRDSRDRTILQHTPAAAIDVLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINQ VLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKSAHKESVRGLSFCRTDLKFCSCSDD TTVKVWDFARCHEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES FRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEVSSAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNVGQNQGYGEQ NPAFGGRFPGNFPVPEPPTTPGPFPPGLTRNEGTIPGVGAAMPLSIQSLDASQGEKQPLPISMPFGSPPLPPGPHPSLLAANQQQGYQQNPQQMPQQQHQ PHPQHMPPLPMPPPNMQQLQPPSHVPLLPHMHLPRPPQMPPHGMPSPIPSSMPGSLPSSLPGPMGMQGTMNQMVPSLQQGHFMGMNPLHAGSLPTSAAPT VGGGFPNGLPNMQGPSNASGGQMYSQGGPFNRPQGGQMPMMPGFNPYQSGNQSGMPPPLPPGPPPHSQTPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	2.44	0.8941
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	3.46	0.8912
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	3.87	0.8992	Pt-RPB1.1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	6.32	0.8943
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	7.07	0.8628
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	7.48	0.8855
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.004G208900 [exp]	7.74	0.8793
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	8.83	0.8893
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	13.92	0.8213
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	14.42	0.8756

Compare expression of checked genes

Potri.001G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.