Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54450 694 / 0 Major facilitator superfamily protein (.1) AT1G22540 470 / 2e-160 Major facilitator superfamily protein (.1) AT3G53960 471 / 3e-160 Major facilitator superfamily protein (.1) AT1G72125 459 / 5e-156 Major facilitator superfamily protein (.1) AT1G22550 457 / 2e-155 Major facilitator superfamily protein (.1) AT1G72140 453 / 6e-154 Major facilitator superfamily protein (.1) AT1G72120 452 / 2e-153 Major facilitator superfamily protein (.1) AT2G37900 451 / 6e-153 Major facilitator superfamily protein (.1) AT1G22570 442 / 2e-149 Major facilitator superfamily protein (.1) AT3G54140 436 / 5e-147 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197333 [exp] 1007 / 0 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 1003 / 0 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 497 / 5e-171 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 487 / 5e-167 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.006G092000 [exp] 481 / 2e-164 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 476 / 7e-163 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 473 / 1e-161 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 473 / 2e-161 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 472 / 4e-161 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039521 [exp] 712 / 0 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 695 / 0 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 460 / 2e-153 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 452 / 3e-153 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 449 / 9e-152 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 447 / 4e-151 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10024340 [exp] 439 / 5e-148 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 426 / 1e-142 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 423 / 2e-141 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 425 / 2e-140 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G027100.1 pacid=42792942 polypeptide=Potri.001G027100.1.p locus=Potri.001G027100 ID=Potri.001G027100.1.v4.1 annot-version=v4.1 ATGTCCAAATTCTCACAACCTTCTGTGGATAGCACCGTTGCTCTCATCATGACACAAAATGGCCGAGCAGAGACCAAGGTTGTCTCCACCACACGAAAAC CCTCCAAAGGTGGCTGGAATGCTGCCATCTTCATTATCTTTGTTGAGGTGGCTCTGAGATTTGCCTACTATGGTTTGGCTGGTAACCTCATAACATACCT CACAAATGATCTTCATCAGTCCACTTCTACGGCCATCAAGAACATCAATACATGGGTTGGTGTCTCGGCAATCTTCCCTATCTTTGGAGCTATTGTAGCT GACTCTTTACTTGGCCGCTTCAAGACCATCCTTCTGTCTTCGACCATTTACTTCATCGGGATGGTTCTGTTGACCTTATCAGTCTCAGTAATTCCTACGC ATTACAGGGAGGCTGTGTTCTTTATCGCTCTCTACATACTAGCTGTTGGTGAAGGTGGTCACAAGCCAAGTGTGCAGACCTTCGCCGCGGATCAGTTTGA TGAGGAGGAGCCAGAGGAGAAGGCAGCCAAGAGCTCATTCTTCAACTGGTGGTACTTAGGCATAGTGGTTGGTGCATCTTCAGCTATATTGGTGGTTATT TATATCCAGGACAATCTCGGATGGACAGCAGGAATAGGAATCCTGACAGGAGCTTTAGGGGTGGCACTGTTTATTTTCTTGATAGGAATTAAGAGATACA GGAAACAAGCTCCAGTGGGAAGCCCTTTCACAATGGTGGCACAAGTATTTGTGGCAGCCACGAGGAAGCGGCGCGTGGTCCAGACGCGACAAGGGTGGGG CATATGTTATGAGGCAGGTGGGACCGACATCGAAGGTCAAACCCGGAAACGAACTTTGGCAGCCACTAATCAATTCAGGTTCTTGGACAAGGCCATGATC ATTGATGATTTAGATGCCTCAAGCAAAAATAGGAACCCTTGGCGGCTATGCTCACTCAACCAAGTGGAAGAAGTAAAGCTTGTCCTGCGCCTCCTCCCCA TTTGGTTAAGTTGCTTAATGTTCACTGTAGTGATAGTTCAAACACACACTCTTTTCATCAAGCAAGGTAGCACAATGACCAGATCAATAGGACCAAACTT CCAAGTTCCACCAGCATCATTTCAAAGCCTCGTAGGCCTCACGATCCTCTTTACTATCCCACTTTACGAACGTGTTTTCATCCCAGCAGCGAGAAAAATA ACCGGGCACAGCTCCGGTATAACAATGCTACAACGGATTGGCATTGGCCTGTTTCTGTCTATAGTAGAAATGGTGGTAGCAGCTCTAGTAGAGGCTAAAA GGGTTAGCATTGCAAGAGAACATGGCCTAATGGACATCCCAAAAGCAACAATACCAATGAGTGTCTGGTGGATACTTCCGCAGTACATGATCAGTGGAAT ATCAGATGTGTTCACGGTCGTTGGATTACAAGAATTGTTCTATGATCAAATGCCGGAATCGATGAGAAGCATGGGAGCCGCAGCATATATAAGTGTAACT GGACTTGGGAGCTTTTTCAACACTGCAATTATAACCGTGGTGCAGGCTATTACAGCAAGGTCCAGTGGCATTTTGCTTGGCAACAATCTTAACCGTGCCC ATGTTGACTACTTCTACTGGATCTTGGCTGTATTGAGTGCTCTAAATTTTTGTGTTTATTTATGGGTTGCTCATGGTTTCGTGTACAAAAAAGTTGAAGG TGAGAAACCACAAGAGGGCAGGGAATTGGCCTTTGCTGAGAATTTAGATGCGAAAACATGA
AA sequence Show only first row Show all	>Potri.001G027100.1 pacid=42792942 polypeptide=Potri.001G027100.1.p locus=Potri.001G027100 ID=Potri.001G027100.1.v4.1 annot-version=v4.1 MSKFSQPSVDSTVALIMTQNGRAETKVVSTTRKPSKGGWNAAIFIIFVEVALRFAYYGLAGNLITYLTNDLHQSTSTAIKNINTWVGVSAIFPIFGAIVA DSLLGRFKTILLSSTIYFIGMVLLTLSVSVIPTHYREAVFFIALYILAVGEGGHKPSVQTFAADQFDEEEPEEKAAKSSFFNWWYLGIVVGASSAILVVI YIQDNLGWTAGIGILTGALGVALFIFLIGIKRYRKQAPVGSPFTMVAQVFVAATRKRRVVQTRQGWGICYEAGGTDIEGQTRKRTLAATNQFRFLDKAMI IDDLDASSKNRNPWRLCSLNQVEEVKLVLRLLPIWLSCLMFTVVIVQTHTLFIKQGSTMTRSIGPNFQVPPASFQSLVGLTILFTIPLYERVFIPAARKI TGHSSGITMLQRIGIGLFLSIVEMVVAALVEAKRVSIAREHGLMDIPKATIPMSVWWILPQYMISGISDVFTVVGLQELFYDQMPESMRSMGAAAYISVT GLGSFFNTAIITVVQAITARSSGILLGNNLNRAHVDYFYWILAVLSALNFCVYLWVAHGFVYKKVEGEKPQEGRELAFAENLDAKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	1.00	0.9419
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.004G015600 [exp]	1.41	0.9386	Pt-LCOSC2.7
					Potri.010G084201 [exp]	3.00	0.9186
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	3.60	0.8658
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	4.00	0.9144
AT1G07200			Double Clp-N motif-containing ...		Potri.010G188200 [exp]	4.69	0.8776
					Potri.010G147200 [exp]	5.47	0.8971
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064800 [exp]	5.47	0.8787
					Potri.005G112750 [exp]	6.32	0.8406
					Potri.008G103700 [exp]	8.00	0.8830

Compare expression of checked genes

Potri.001G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.