Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54440 1629 / 0 glycoside hydrolase family 2 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196500 [exp] 2014 / 0 AT3G54440 1650 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024155 [exp] 1670 / 0 AT3G54440 1594 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Lus10039520 [exp] 977 / 0 AT3G54440 968 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Lus10039519 [exp] 621 / 0 AT3G54440 567 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF00703 [poplar] [flax] Glyco_hydro_2 Glycosyl hydrolases family 2 CL0058 [poplar] [flax] Glyco_hydro_tim PF02836 [poplar] [flax] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0202 [poplar] [flax] GBD PF02837 [poplar] [flax] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain CL0103 [poplar] [flax] Gal_mutarotase PF02929 [poplar] [flax] Bgal_small_N Beta galactosidase small chain CL0159 [poplar] [flax] E-set PF16353 [poplar] [flax] DUF4981 Domain of unknown function (DUF4981)
Representative CDS sequence Show only first row Show all	>Potri.001G027400.1 pacid=42792410 polypeptide=Potri.001G027400.1.p locus=Potri.001G027400 ID=Potri.001G027400.1.v4.1 annot-version=v4.1 ATGACATCTTTGGTAGCACAAGTGGTGTCTCCGGTGGAAACTGGACATAAAGTTTGGCAAGATCAGTCTTTTATTAAGTGGAGAAAGAGAGATCCTCATG TCACTTTGCACTTCCATGAATCTGTTGAAGGATCTCTTAGATACTGGTATCAACGCAACAAAGTGGATCATTTGGTATCTAATTCTGCTGTTTGGAATGA TGATGCCGTTCAAGGAGCTCTTGATTGTGCAGCCTTCTGGGTTAAGGATTTGCCTTTCGTTCAATCTTTGTCTGGCTTATGGAAATTTTTCTTGGCTCCA GACCCTACAAGTGTTCCTAATAAATTTTATGGCACTGCATTTGAGGACTCAGAGTGGGAAACTTTACCTGTCCCTTCAAATTGGGAGATGCATGGATATG ATCGGCCTATTTATACCAATGTAATATATCCATTTCCAGTTGATCCTCCTCATGTCCCTGATGATAATCCTACTGGCTGCTACAGAACATACTTTGATAT TCCTGAAGAATGGCAAGGTCGAAGGATTTTACTGCATTTTGAAGCTGTTGATTCAGCATTCTGTGCTTGGATAAACGGGGTTCCTGTGGGATATAGTCAG GATAGTAGGCTACCTGCTGAGTTTGAAATTACAGATTACTGTCATCCATGTGGTTCTGGCAAGAAGAATGTTCTAGCTGTTCAAGTCTTTAGATGGAGTG ATGGGTCTTACCTTGAAGATCAAGACCATTGGTGGTTGTCGGGTGTTCACAGAGATGTGCTGCTTCTTTCCAAGCCTCAGGTATTCATTGCAGACTACTT TTTCAAATCAAACCTGGCTGAGAATTTTACTTGTGCAGATATACAGGTGGAAGTGAAAATAGAAAGCTCTCTAGCAATTCCTAAAGAAAAAATTCTTGCA AACTTCACCATAGAAGCTGCATTATATGACACTGGAAGCTGGTACGACAGTGAAGAATCTGCTAATCTGCTTTCATCCAACGTGGCTAATTTAAAGCTCA CTCATTCCCCTATGGGACTTCTAGGATTTTTGGGTAATGTTCTTGAAGGGAAACTCGAAATGCCCAAGCTTTGGTCTGCAGAGCAGCCAAACCTGTACAT TCTTGTTCTCTCCCTCAAAGATGCAACTGGACAAGTAGTTGACTGTGAATCATGCCTAGTGGGCATAAGACAAGTATCAAAGGCTCCCAAACAGCTACTT GTTAATGGGCATCCAGTTATATTAAGAGGTGTGAACAGGCATGAACATCATCCACGTGTAGGGAAGACAAATATAGAGTCTTGTATGATTAAGGATCTGG TTCTAATGAAGCAAAACAATATGAATGCTGTGAGGAACAGTCATTATCCCCAGCACCATCGTTGGTACGAGTTGTGCGATCTTTTTGGCATGTACATGAT AGATGAAGCCAACATTGAGACACATGGTTTTTATCTTTGTGAACATCTGAAGCATCCTACTCAGGAGCAAAGTTGGGCTGCTGCAATGATGGATCGAGTG ATAAGCATGGTCGAGAGGGACAAAAATCATGCATGCATAATTTCTTGGTCCTTAGGAAACGAGGCCTCATATGGACCAAATCATTCTGCTGCAGCTGGTT GGATCCGTGAAAAGGACACCTCACGGCTGGTGCACTATGAAGGAGGTGGATCCAGAACAACATCCACTGATATTGTGTGCCCGATGTATATGCGTGTTTG GGACATAGTGAAGATTGCAAAAGATCCTGCTGAATCACGTCCTTTGATATTGTGCGAGTATTCACATGCAATGGGGAATAGTAATGGGAATATACATGAG TATTGGGAGGCAATCAATAGCACATTCGGTCTACAAGGAGGCTTTATCTGGGACTGGGTTGACCAGGGGTTATTGAAGGACAGTGGAGACGGTACCAAAC ACTGGGCTTATGGAGGTGACTTTGGGGATACACCTAATGATCTGAACTTTTGTTTGAATGGCCTTACATGGCCGGATCGTACTCCTCATCCTGCATTGCA TGAAGTTAAGTATGTTTATCAGCCAATCAAGGTTTCCCTAGAGGAAAGCAGAATAAAGATAACCAGCACCCATTTCTTTCAAACAACACAAGGTTTAGAG TTTAGCTGGGCCACCCAGGGTGATGGATATGAAATTGGATCTGGAATTCTCTCTCTTCCACCGATAGAACCTCAGAGCAGTTATGAGTTAGAATGGGAGT CAGGTCCTTGGTATCCTCTTTTGGCTTCGTCTTTTGCAGAAGAAATATTTTTAACAATAACTACTACACTTCTGCATTCCACACGCTGGGTTGAAGCTGG TCATGTTGTTTCATCGTCACAAGTCCAGTTGCCTACCACAAGAAAGATCTTACCTCATGTTATCAAAACTACTGATGCTAAAGTCTTAATTGAAACTCGT GGAGATATAGTTAGAGTCAGCCTGCCAAGCTTTTGGGAGATAACATGGAACATTCAAACAGGAAGTGTTGAGAGCTGGAAGGTTGGAGGAGTTCCTGTTA TGAATAAAGGCATATTCCCATGCTTCTGGAGAGCACCAACAGATAATGACAAAGGTGGAGAAAAAAAAAGTTATTACTCCAGGTGGAAAGAAGCTCGTAT TCATAGCATTGTATATCACACAAAAAGTTGTTCTGTGAAGAGCACAGCCAATGATATTGTGAAAATAGAGGTTGTTTATGTCGGTGCCCCAAGTTGTGAG GAGGGCTCATCTTCACATTCAAATGCTTTATTCACAGTTAATATGATCTACACAATTTATAGTTCTGGGGACTTGATTATTGAATGCAATGTAATTCCAA GTTCTGAGCTTCCACCTCTGCCTCGAGTGGGAGTTGAATTGCACTTGGAGAAATCAGTGGATCAGATTAAATGGTATGGAAGAGGGCCATTTGAATGTTA TCCAGATAGAAAAGCAGCAGCCCATGTTGGGGTCTATGAGCAGAATGCCAGTGACATGCATGTTCCTTATATTGTTCCTGGAGAATGTTCCGGTAGAGCA GATGTTAGGTGGGTGACGTTTCAGAACAAGGATGGAGTAGGAATCTTTGCTTCAACTTATGGCAGCTCCCCACCTATGCAAATGAGTGCTAGTTACTATT CCACAGCAGAACTTGACCAAGCGACACACAATGAAGAACTTGCTCAAGGAAATGACATTGAGGTGCATCTTGACCACAAACATATGGGAGTAGGTGGAGA TGATAGTTGGTCACCATGCGTCCATGACAACTATCTTGTTCCAGCTGTGCCGTACTCCTATTCTATCAGGTTGTGTCCTATTACTGCAGCTACATCTGGC CTTGAGATATACAAATCCCAGCTTCCGAACTAA
AA sequence Show only first row Show all	>Potri.001G027400.1 pacid=42792410 polypeptide=Potri.001G027400.1.p locus=Potri.001G027400 ID=Potri.001G027400.1.v4.1 annot-version=v4.1 MTSLVAQVVSPVETGHKVWQDQSFIKWRKRDPHVTLHFHESVEGSLRYWYQRNKVDHLVSNSAVWNDDAVQGALDCAAFWVKDLPFVQSLSGLWKFFLAP DPTSVPNKFYGTAFEDSEWETLPVPSNWEMHGYDRPIYTNVIYPFPVDPPHVPDDNPTGCYRTYFDIPEEWQGRRILLHFEAVDSAFCAWINGVPVGYSQ DSRLPAEFEITDYCHPCGSGKKNVLAVQVFRWSDGSYLEDQDHWWLSGVHRDVLLLSKPQVFIADYFFKSNLAENFTCADIQVEVKIESSLAIPKEKILA NFTIEAALYDTGSWYDSEESANLLSSNVANLKLTHSPMGLLGFLGNVLEGKLEMPKLWSAEQPNLYILVLSLKDATGQVVDCESCLVGIRQVSKAPKQLL VNGHPVILRGVNRHEHHPRVGKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHHRWYELCDLFGMYMIDEANIETHGFYLCEHLKHPTQEQSWAAAMMDRV ISMVERDKNHACIISWSLGNEASYGPNHSAAAGWIREKDTSRLVHYEGGGSRTTSTDIVCPMYMRVWDIVKIAKDPAESRPLILCEYSHAMGNSNGNIHE YWEAINSTFGLQGGFIWDWVDQGLLKDSGDGTKHWAYGGDFGDTPNDLNFCLNGLTWPDRTPHPALHEVKYVYQPIKVSLEESRIKITSTHFFQTTQGLE FSWATQGDGYEIGSGILSLPPIEPQSSYELEWESGPWYPLLASSFAEEIFLTITTTLLHSTRWVEAGHVVSSSQVQLPTTRKILPHVIKTTDAKVLIETR GDIVRVSLPSFWEITWNIQTGSVESWKVGGVPVMNKGIFPCFWRAPTDNDKGGEKKSYYSRWKEARIHSIVYHTKSCSVKSTANDIVKIEVVYVGAPSCE EGSSSHSNALFTVNMIYTIYSSGDLIIECNVIPSSELPPLPRVGVELHLEKSVDQIKWYGRGPFECYPDRKAAAHVGVYEQNASDMHVPYIVPGECSGRA DVRWVTFQNKDGVGIFASTYGSSPPMQMSASYYSTAELDQATHNEELAQGNDIEVHLDHKHMGVGGDDSWSPCVHDNYLVPAVPYSYSIRLCPITAATSG LEIYKSQLPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	0	1
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	1.41	0.8553
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	2.00	0.8554
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	3.46	0.8472
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.013G066700 [exp]	3.46	0.8428
AT4G32030			unknown protein		Potri.006G259700 [exp]	4.00	0.8189
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	4.47	0.8144
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	4.47	0.8452
AT3G20480		AtLpxK	lipid X K, tetraacyldisacchari...		Potri.001G418800 [exp]	5.47	0.8381
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	6.00	0.8498
AT1G60670			Protein of unknown function (D...		Potri.008G145100 [exp]	6.48	0.8256

Compare expression of checked genes

Potri.001G027400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.