Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 130 / 1e-33 disease resistance family protein / LRR family protein (.1) AT2G25790 117 / 4e-29 Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 115 / 9e-29 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 111 / 3e-27 Leucine-rich repeat protein kinase family protein (.1) AT3G28890 110 / 9e-27 AtRLP43 receptor like protein 43 (.1.2) AT4G13920 105 / 3e-25 AtRLP50 receptor like protein 50 (.1) AT1G33600 103 / 1e-24 Leucine-rich repeat (LRR) family protein (.1) AT3G11080 103 / 2e-24 AtRLP35 receptor like protein 35 (.1) AT2G26380 102 / 2e-24 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 102 / 2e-24 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 164 / 8e-47 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.006G237400 [exp] 120 / 4e-30 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G196832 [exp] 114 / 1e-28 AT2G34930 203 / 8e-57 disease resistance family protein / LRR family protein (.1) Potri.005G030800 [exp] 114 / 2e-28 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G043800 [exp] 114 / 3e-28 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.005G031300 [exp] 111 / 3e-27 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031700 [exp] 108 / 3e-26 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.018G045500 [exp] 108 / 5e-26 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G262800 [exp] 108 / 5e-26 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016325 [exp] 144 / 2e-40 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 149 / 3e-40 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10016339 [exp] 147 / 1e-39 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 146 / 3e-39 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 144 / 2e-38 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 142 / 1e-37 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 142 / 1e-37 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016337 [exp] 141 / 2e-37 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 141 / 3e-37 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 140 / 4e-37 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G027500.2 pacid=42787637 polypeptide=Potri.001G027500.2.p locus=Potri.001G027500 ID=Potri.001G027500.2.v4.1 annot-version=v4.1 TTCACTTCGAAAGGATGCAGGCTGAGTGATGAAGGTGCCCTTTTGAAGTTCAAGAACGATCTCACCGACCCTTCAAACCGGCTTGCATCCTGGGTTAGTG ATGAGGATTGCTGTAGATGGTCTGGAGTTGTTTGCAACAACTTAACTGGCCATGTTCTTGAGCTCTATCTTGGAACCCACATTTCTTATGATGTAAAATT AGCCTCCACTGCTTCTGTTGACTTGGAAGATAATCGTGGATCAAAGCTCGGCGGCGAGATTAGCTCTTCTTTGCTCAACTTGAAATATTTGAGGTACTTG GACCTAAGCAACAAAGATTTTGGAGGAATTCACATCCCCAAGTTTCTTGGCTCCATGAGGAATCCAAGTGGCAATATTCCCAACTCCATTGGAACTTTAA GCTCTCTTCAGTCATTGCATCTTCAAAACAGCCACCTCTCTGGCAAGGTTCCTCTGTCACTGAAAAATTGTACCCAATTAGTCACACTGGATTTTACTGT AAACAATTTCACAGGGAACCTTCCAACATGGATGGGGAAACTTTCAAGGATGAAGATTCTAAATCTTCATGCAAATCAGTTTGATGGCCAAATACCTGTA GAATTTTGTGATCTAGCTTCTTTACAAGTTTTGGATCTTGCTTATAACAACTTGAATGGAACTATACCGAGCTGCATCGACCATTTTAGTTCCATAGACA AGATGAATGGAAGAGTAGCTGAATATAGCAGTATTCTCAATTTCGAAAGTATAGATCTTTCCCTCGATGATTTATCTGGAAAGATTCCAAACGAAGTAAC AAGCCTTGAGGAATTGCAGGCACTAAATTTGTCACATAATTGTTTGGAAGGAAAAATTCCTGAGGATGAAGGTGATATGGGATCGCTATAA
AA sequence Show only first row Show all	>Potri.001G027500.2 pacid=42787637 polypeptide=Potri.001G027500.2.p locus=Potri.001G027500 ID=Potri.001G027500.2.v4.1 annot-version=v4.1 FTSKGCRLSDEGALLKFKNDLTDPSNRLASWVSDEDCCRWSGVVCNNLTGHVLELYLGTHISYDVKLASTASVDLEDNRGSKLGGEISSSLLNLKYLRYL DLSNKDFGGIHIPKFLGSMRNPSGNIPNSIGTLSSLQSLHLQNSHLSGKVPLSLKNCTQLVTLDFTVNNFTGNLPTWMGKLSRMKILNLHANQFDGQIPV EFCDLASLQVLDLAYNNLNGTIPSCIDHFSSIDKMNGRVAEYSSILNFESIDLSLDDLSGKIPNEVTSLEELQALNLSHNCLEGKIPEDEGDMGSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.001G027500 [exp]	0	1
AT1G11940			Core-2/I-branching beta-1,6-N-...		Potri.002G227000 [exp]	13.85	0.5987
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.001G238800 [exp]	89.83	0.6097
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	113.92	0.6003
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G448000 [exp]	128.83	0.5622
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G022500 [exp]	142.52	0.5834
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.012G038300 [exp]	211.26	0.5682	Pt-EPR1.2
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	214.55	0.5736

Compare expression of checked genes

Potri.001G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.