Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19160 45 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196200 [exp] 551 / 0 ND / Potri.001G193400 [exp] 56 / 2e-08 AT4G19160 516 / 0.0 unknown protein Potri.003G033300 [exp] 56 / 3e-08 AT4G19160 522 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024153 [exp] 526 / 0 ND 49 / 5e-06 Lus10039517 [exp] 333 / 1e-112 ND / Lus10038244 [exp] 46 / 5e-05 AT4G19160 375 / 7e-127 unknown protein Lus10025855 [exp] 44 / 0.0002 AT4G19160 303 / 3e-101 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13369 [poplar] [flax] Transglut_core2 Transglutaminase-like superfamily CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.001G027600.2 pacid=42789737 polypeptide=Potri.001G027600.2.p locus=Potri.001G027600 ID=Potri.001G027600.2.v4.1 annot-version=v4.1 ATGGCTGCCATAGCTGCAATTTTATCATCAATACCATCTTCTTCCTCATCTTCCAAGTTCTCAAAATACCAATCCCATCCTTCTGTTCCTCCTCCTTGCC GTGTGGTTTGCCGTGGAGGATCCCAACCTCCTCCCCCGGTAACAACTGACTTCCAATTTGCTTTGCATGATGCCTTGGATTCTTCTGGAATCAACACCAC TCATGCCAGAGAGGCAAGGCAAAATTTCATGTCACAAATTAAAAGATTGTCAAGCATTGAGAGGGAAATCAGCATTAGCATTAATAGACGTGTTGATTTG GCGAAAACGGCACTTTATATAGCAGCTGAGGATGATTCTCTCATATCACACTCTTCGGTTGCTCTCCCCGTGGATGCTTTCATTGAAAGATTGGATGATC TTTCCATGGGATTCTGCACTAATAATAGCTCTGCATTGAAGTCATCGCCAGAGATGCTTCTGGATAGCTTGGAGAAATTTTTGTATGTCAAGAAGGGCTT TCGAAGGAGCACTATGAAAAGTCGATTGGAGCCACGAGCTTTGTATCTTCATTCTGTTTTGACACATCGATCAGGTTCTGCTGTTATGCTTGCACTTATA TACTCGGAAATCCTGAAAACGCTTCGGTTATGGAGCCTGTTGGATTTTGATTGTGAGATTTTCTTCCCACATGACAACCATGGTCTTCCAAGAGGCTATC ACAAGCAGAAAAGTAAGGAGTCTGATCATCAACACATTTTGACATCACTTACTCTGTTGGAGAAGATTTTGAGAAACTTAAAGGAGGCTTTTTGGCCATT TCAACATGATCATACCAAGAGTTTATTCTTACAGGCAGCACATGCAGCTGACTGTGTTGATATATCAAAAACTTTTGAAGGAAGTGGTGCTCAGCTTGCA TCTGCAAAGGCTGCTCAACATAGGCTAGACCGTGGTGTTTGGACTAGTGTACACTTCGGGGACATGAGACGTGCATTATCTGCTTGTGAGCGTTTAATAC TCCTTGAATCCGACCCTAAGGAACTAAGAGACTACAGTGTTCTTTTATACCATTGTGGGTTTTATGAGCAATCGCTGCAATATCTCAAGTTGTATCAAGA GAAGGGTTCTTCCTTACAAAAACAGGCATCCAATAAATTAAGCAGCTTGGAGGAAGATGCTGTGGAGAAACTAATGATACGCCTTAACCTCATTTCAATG GAGGAAGGTTGGAGCAAGCCCTCACATGTTAGAAATTTTCTTGGAAATAACTCTGAACCTTGGTAG
AA sequence Show only first row Show all	>Potri.001G027600.2 pacid=42789737 polypeptide=Potri.001G027600.2.p locus=Potri.001G027600 ID=Potri.001G027600.2.v4.1 annot-version=v4.1 MAAIAAILSSIPSSSSSSKFSKYQSHPSVPPPCRVVCRGGSQPPPPVTTDFQFALHDALDSSGINTTHAREARQNFMSQIKRLSSIEREISISINRRVDL AKTALYIAAEDDSLISHSSVALPVDAFIERLDDLSMGFCTNNSSALKSSPEMLLDSLEKFLYVKKGFRRSTMKSRLEPRALYLHSVLTHRSGSAVMLALI YSEILKTLRLWSLLDFDCEIFFPHDNHGLPRGYHKQKSKESDHQHILTSLTLLEKILRNLKEAFWPFQHDHTKSLFLQAAHAADCVDISKTFEGSGAQLA SAKAAQHRLDRGVWTSVHFGDMRRALSACERLILLESDPKELRDYSVLLYHCGFYEQSLQYLKLYQEKGSSLQKQASNKLSSLEEDAVEKLMIRLNLISM EEGWSKPSHVRNFLGNNSEPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G027600 [exp]	0	1
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	12.16	0.9241
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	15.36	0.9192
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	17.32	0.9127
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Potri.001G438500 [exp]	28.89	0.8470
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	34.02	0.8433
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Potri.004G022900 [exp]	34.72	0.8547
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	35.32	0.8769
AT5G62840			Phosphoglycerate mutase family...		Potri.015G074700 [exp]	35.63	0.9096
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	37.22	0.9047
AT2G25605			unknown protein		Potri.006G249000 [exp]	38.98	0.9029

Compare expression of checked genes

Potri.001G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.