Plant FIBer expression Database

Potri.001G027800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G129400
[exp]
47 / 1e-06 AT4G12560 100 / 3e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Potri.012G014300
[exp]
39 / 0.001 AT3G16210 88 / 6e-19 F-box family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G027800.2 pacid=42792443 polypeptide=Potri.001G027800.2.p locus=Potri.001G027800 ID=Potri.001G027800.2.v4.1 annot-version=v4.1
ATGGAGGCTCTACGGCTACTGCCAAACCTGTCGACCAACGGTTTCAGTTTCAGATCGTCAATTCCTGTAACGGCTTGCTTTGTGTACGAGAGTATATGCC
TCTTCCGGATTGTGAAAAGCCAAAGGGCTTTCAAGAGGTATCATGGGGACTTTGATTTTTGCCCCAAGATCAACCAGTTTAAGGCTGTTAGAGTATTCTA
CTTGTCGCATTATGGAAATGATCAAAGGGCTGGTCTGCATGGCATGGTATACACAACTGGGACTGTAACTTGGAGAATTAGTAAGGCAGCCAGGGAAGTT
TTCGATACTCATAGGTATGATTCAGCATTTATCAATGGATCCCTTCATTGGTTTGCGAAGAGTGATCTTGGAAATCTAACGTGCACTTCAATTTTGAAAC
CGAGCAGTTTGGATCATTCTCGTTGCCTCCTCCTGATGCTGGTTGGTGTGGTTTGCGGCTCATAG
AA sequence
>Potri.001G027800.2 pacid=42792443 polypeptide=Potri.001G027800.2.p locus=Potri.001G027800 ID=Potri.001G027800.2.v4.1 annot-version=v4.1
MEALRLLPNLSTNGFSFRSSIPVTACFVYESICLFRIVKSQRAFKRYHGDFDFCPKINQFKAVRVFYLSHYGNDQRAGLHGMVYTTGTVTWRISKAAREV
FDTHRYDSAFINGSLHWFAKSDLGNLTCTSILKPSSLDHSRCLLLMLVGVVCGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G027800
[exp]
0 1
AT5G05800 unknown protein Potri.014G026000
[exp]
14.73 0.8486
AT4G21320 HSA32 HEAT-STRESS-ASSOCIATED 32, Ald... Potri.004G031100
[exp]
25.33 0.8193
AT1G16260 Wall-associated kinase family ... Potri.009G157201
[exp]
61.70 0.7873
AT3G07070 Protein kinase superfamily pro... Potri.002G241600
[exp]
131.45 0.6800
AT1G64295 F-box associated ubiquitinatio... Potri.008G214000
[exp]
148.04 0.7629
AT5G05800 unknown protein Potri.011G094000
[exp]
220.99 0.7010
Potri.006G021800
[exp]
266.83 0.6922

Potri.001G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.