Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 1107 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 1018 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1015 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G21980 740 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 721 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 676 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G09920 588 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 586 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 560 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G01460 246 / 2e-73 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196000 [exp] 1474 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 1052 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 744 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 743 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 632 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 623 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.019G015768 [exp] 601 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 591 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 570 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008651 [exp] 1039 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 1038 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 1015 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 1010 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 982 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 976 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039507 [exp] 968 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 954 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 748 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 746 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.001G027900.1 pacid=42788109 polypeptide=Potri.001G027900.1.p locus=Potri.001G027900 ID=Potri.001G027900.1.v4.1 annot-version=v4.1 ATGAGCATAGAGAACGTTGGCATAATAAAGGCATGGGAAGCAAAACTTAGGAAATCACAAGCAACAAAGAAGAAGAAAAACAACAGTGTCTTTCTCACCA TGATGTCAGCAGCAGTAGCTCATGTAGATGATGATGATCCTCCTTGTAAAGAACCTGTACACCATGCAGAAAAGGCCCTTTGTAATGGTGATTTCTACAC AGGCCTATGGCTTGACAACCTCCCTCATGGACATGGAAAATATCTTTGGACAGATGGTTGCATGTATCTTGGTGAATGGTATAAAGGTAAAACAATGGGA AAGGGTAAATTTGGTTGGTTTTCTGGTGCGACCTACGAGGGTGATTTCAAGGGGGGTTATATGGATGGTAGAGGGACCTTTACAGGTTCTTCAGGTGATG CTTATAGAGGCTACTGGGTTATGAATTTGAGACATGGACAAGGTACACAGAGTTATGCTAATGGTGATTGTTATGATGGTGATTGGAGAAGAGGTTCACA AGATGGACATGGAAGGTACCAATGGAATACTTCGAATCGTTATATTGGTCAATGGAAGAGTGGGTTGATGAATGGTAATGGAACTATGATTTGGAGCAAT GGGAATAGGTATGATGGGTTTTGGCAAGATGGACTGCCTAAAGGAAATGGGAGTTTTAGATGGTCAGACGGAAATTTTTATGTGGGTTTTTGGAGTAAAG ATCCTAATGAGCAAAATGGGACTTATTATCCATCTGGGTCTGCGTCAGGGAATTTGGATTGGGATCCCCAGGAGGTGTTTTTGGATTTGAACGATTGTAA GATTTCTACTTGTGAAAAGATGTCAATTTTTCCATCGCAGAAGATGTTGAATTGGTCTGGGGTTCTTGATCAAGGGAATGCTAATCCAGTGAAAGGAAAT GGCGGTGAAGGAAGGCTCAGGAGGATATCAGTGGATGGGAGGCTGAGTAACTACAGCGTGGCTTCATTAGATGGCTGTGATGTTTATAGTGGTGGGGTTG ATGGGGATTTGAGGGATGTAGACGAAGGGTTTGGAAATCTCCAAGTTGAAGAATTGGATCCAAAAATATCTAAATGGAGAACACAGCCTGTGAAGAAGCA AGGGGAAACAATATCCAAAGGGCATAAGAATTATGAACTCATGCTCAATCTGCAGTTGGGAATAAGACATTCGGTGGGACGGCCTGCTCCAGCTATATCT CTTGATCTGAAGTCTTCGGCATTTGATCCCAAAGAAAAAGTTTGGACTAAATTTCCATCAGAGGGATCCAAGCACACCCCACCTCACCAGTCTTCTGAGT TCAAATGGAAGGATTATTGCCCTGTAGTTTTCAGGACTCTTAGGAAATTGTTCAATGTGGATGCAGCTGATTACATGTTATCGATATGTGGGAATGATGC ACTTAGGGAACTCTCATCCCCGGGAAAAAGTGGAAGCTTTTTTTACCTGACAAATGATGATCGCTACATGATAAAGACAATAAAGAAGGCAGAAGTAAAA GTCTTCTTGAGGATGCTGCCAGCCTACTATAATCATGTTCGGTCTTTTGAGAACACTCTAGTAACCAAATTTTATGGTCTTCATTGCGTAAAATTAACAG GGCCGAATCAGAAGAAGGTCCGATTTGTCATTATGGGGAATCTGTTTTGTTCTGAATTCTCTATTCATCGGCGCTTTGACTTAAAAGGTTCGTCCCACGG TCGCATGACTTCTAAACCTGAGTCAGAAATTGATCCAACAACAACCCTCAAGGACCTTGATCTCAATTACATATTTCGGTTGCAGAAATCTTGGTTCCAA GAGTTTTGCAGGCAAGTGGACAGAGATTGTGACTTCCTTGAACAGGAGAGAATAATGGACTACAGTCTTTTGGTTGGTCTACACTTTCGAGAAGCTTCAT ACAGGGAATCCCTCACACCCCCTCGTACTTCTGGAGTTCGGACTCCCACCGGAATTCGCACTCCTGCTGGAGTTCAGACTCCCAATGGACTTCGAACTCC CACCGGACTTCACAGTCCTACAGGAATGGGAGATGAAACTGAATCGGGAGCTCCACGCCTTTCCAGAGTGGATTTGGATAAGCTTTTCATCGATCCCACT CGGTGGGCTTCCATTAAATTAGGTATAAACATGCCGGCAAGGGTTGAAAAGACAGCCAGGAGAAGAGATGGTGAAGCTCAGCTAATTGGAGAACCAACTG GGGTGTTATATGAAGTCGTCCTATTTTTCGGTATCATAGACATTCTACAAGACTATGATATAAGCAAAAAGCTCGAGCACGCATACAAGTCCATGCAGTA TGATCCAACTTCAATCTCTGCCGTTGATCCAAAGCAATACTCAAAACGCTTTCGGGATTTCATCTTCAGAGTATTTGCAGAAGACGCTTGA
AA sequence Show only first row Show all	>Potri.001G027900.1 pacid=42788109 polypeptide=Potri.001G027900.1.p locus=Potri.001G027900 ID=Potri.001G027900.1.v4.1 annot-version=v4.1 MSIENVGIIKAWEAKLRKSQATKKKKNNSVFLTMMSAAVAHVDDDDPPCKEPVHHAEKALCNGDFYTGLWLDNLPHGHGKYLWTDGCMYLGEWYKGKTMG KGKFGWFSGATYEGDFKGGYMDGRGTFTGSSGDAYRGYWVMNLRHGQGTQSYANGDCYDGDWRRGSQDGHGRYQWNTSNRYIGQWKSGLMNGNGTMIWSN GNRYDGFWQDGLPKGNGSFRWSDGNFYVGFWSKDPNEQNGTYYPSGSASGNLDWDPQEVFLDLNDCKISTCEKMSIFPSQKMLNWSGVLDQGNANPVKGN GGEGRLRRISVDGRLSNYSVASLDGCDVYSGGVDGDLRDVDEGFGNLQVEELDPKISKWRTQPVKKQGETISKGHKNYELMLNLQLGIRHSVGRPAPAIS LDLKSSAFDPKEKVWTKFPSEGSKHTPPHQSSEFKWKDYCPVVFRTLRKLFNVDAADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKAEVK VFLRMLPAYYNHVRSFENTLVTKFYGLHCVKLTGPNQKKVRFVIMGNLFCSEFSIHRRFDLKGSSHGRMTSKPESEIDPTTTLKDLDLNYIFRLQKSWFQ EFCRQVDRDCDFLEQERIMDYSLLVGLHFREASYRESLTPPRTSGVRTPTGIRTPAGVQTPNGLRTPTGLHSPTGMGDETESGAPRLSRVDLDKLFIDPT RWASIKLGINMPARVEKTARRRDGEAQLIGEPTGVLYEVVLFFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSKRFRDFIFRVFAEDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.001G027900 [exp]	0	1
AT3G63088		RTFL14, DVL14	DEVIL 14, ROTUNDIFOLIA like 14...		Potri.008G202000 [exp]	3.60	0.7934
AT3G24150			unknown protein		Potri.006G067100 [exp]	9.38	0.7684
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	17.02	0.7574
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	30.39	0.7105
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	36.33	0.6679
AT4G27250			NAD(P)-binding Rossmann-fold s...		Potri.001G415500 [exp]	39.11	0.6361
					Potri.005G161366 [exp]	50.89	0.6451
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025425 [exp]	51.63	0.6803
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	53.58	0.6331
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	54.11	0.6640

Compare expression of checked genes

Potri.001G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.