Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NQR.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27890 307 / 8e-108 NQR NADPH:quinone oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G195700 [exp] 367 / 9e-132 AT3G27890 296 / 1e-103 NADPH:quinone oxidoreductase (.1) Potri.003G195900 [exp] 261 / 9e-90 AT3G27890 258 / 3e-88 NADPH:quinone oxidoreductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026172 [exp] 307 / 6e-108 AT3G27890 267 / 5e-92 NADPH:quinone oxidoreductase (.1) Lus10039505 [exp] 273 / 2e-94 AT3G27890 257 / 3e-88 NADPH:quinone oxidoreductase (.1) Lus10039506 [exp] 258 / 3e-88 AT3G27890 247 / 4e-84 NADPH:quinone oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [poplar] [flax] Flavoprotein PF02525 [poplar] [flax] Flavodoxin_2 Flavodoxin-like fold
Representative CDS sequence Show only first row Show all	>Potri.001G028000.1 pacid=42792673 polypeptide=Potri.001G028000.1.p locus=Potri.001G028000 ID=Potri.001G028000.1.v4.1 annot-version=v4.1 ATGGAAGCATTGGCAGTGAAACCAGTGATCAAAGTGGCAGCTCTTTGTGGGTCTCTTCGTAAAGGTTCTTTCAACCGTGGCCTCCTTCGTTCTGCAATCC AGTTAAGTAAAGAGTCAGTGAACGGCATGGAAATTGAGTACATAGATATCTCACCTCTGCCAATGCTTAATACTGATCTTGAAGTCAATGGTACTTTCCC ACCTGTTGTTGAAGCTTTCCGTCAGAAGATTCTTCAAGCTGATAGTGTCCTCTTTGCCTCGCCTGAGTACAATTTTTCCGTCACCGGACCTTTGAAGAAT GCTATTGACTGGGCATCTAGACCACCAAACTGTTGGGCTGATAAAGCTGCTGCCATTGTAAGTGCCGGAGGAAGTTTTGGTGGTGGACGAGCACAATACC ATCTTCGCCAAATTGGAGTTTATCTTGACCTTCATTTCATCAACAAACCTGAGTTTTACTTGAATGCATTTGCACCTCCTGCAAAATTTGATAGCGATGG CACCTTGATTGATCCGCCGTCCAAGGAGAGACTAAAGGAAGTTCTTTTAAGTTTGCTTGCATTCACTTTGCGACTCAAAGGTCAGTGCTAA
AA sequence Show only first row Show all	>Potri.001G028000.1 pacid=42792673 polypeptide=Potri.001G028000.1.p locus=Potri.001G028000 ID=Potri.001G028000.1.v4.1 annot-version=v4.1 MEALAVKPVIKVAALCGSLRKGSFNRGLLRSAIQLSKESVNGMEIEYIDISPLPMLNTDLEVNGTFPPVVEAFRQKILQADSVLFASPEYNFSVTGPLKN AIDWASRPPNCWADKAAAIVSAGGSFGGGRAQYHLRQIGVYLDLHFINKPEFYLNAFAPPAKFDSDGTLIDPPSKERLKEVLLSLLAFTLRLKGQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.001G028000 [exp]	0	1	Pt-NQR.2
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	2.00	0.9374
AT4G19045			Mob1/phocein family protein (....		Potri.001G132700 [exp]	2.00	0.9209
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Potri.004G013700 [exp]	3.00	0.9209
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	4.89	0.9117
AT3G59490			unknown protein		Potri.017G028900 [exp]	4.89	0.8837
AT5G13560			unknown protein		Potri.010G212900 [exp]	6.32	0.9023
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.012G103100 [exp]	6.32	0.8992
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.013G110800 [exp]	7.34	0.8506	INV1.1
AT1G12440			A20/AN1-like zinc finger famil...		Potri.003G117100 [exp]	8.12	0.8619
AT3G13275			unknown protein		Potri.011G166250 [exp]	8.36	0.9064

Compare expression of checked genes

Potri.001G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.