Plant FIBer expression Database

Potri.001G028100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13500 570 / 0 unknown protein
AT2G25260 481 / 3e-171 unknown protein
AT5G25265 470 / 6e-167 unknown protein
AT3G01720 74 / 3e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G195600
[exp]
652 / 0 AT5G13500 532 / 0.0 unknown protein
Potri.009G070000
[exp]
560 / 0 AT5G13500 515 / 0.0 unknown protein
Potri.001G275600
[exp]
556 / 0 AT5G13500 543 / 0.0 unknown protein
Potri.018G023100
[exp]
478 / 4e-170 AT5G25265 583 / 0.0 unknown protein
Potri.006G258800
[exp]
475 / 4e-169 AT5G25265 577 / 0.0 unknown protein
Potri.001G336400
[exp]
70 / 7e-13 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036037
[exp]
578 / 0 AT5G13500 542 / 0.0 unknown protein
Lus10009691
[exp]
576 / 0 AT5G13500 541 / 0.0 unknown protein
Lus10005347
[exp]
473 / 9e-168 AT5G25265 612 / 0.0 unknown protein
Lus10041028
[exp]
469 / 1e-166 AT5G25265 618 / 0.0 unknown protein
Lus10022320
[exp]
66 / 3e-11 AT3G01720 1181 / 0.0 unknown protein
Lus10014878
[exp]
63 / 1e-10 AT3G01720 1197 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G028100.3 pacid=42787829 polypeptide=Potri.001G028100.3.p locus=Potri.001G028100 ID=Potri.001G028100.3.v4.1 annot-version=v4.1
ATGGGACGGGCTTCGCTGTTAGTTCTGATTCTATTGACTATTGGCTTTTTCTTTGCCACATATAATTTGGTTGCCATGATAATGCATTATAGATCTATTG
GGAAATGGGCACATGACGATTCGGATGGTCAGATATTTTTGGATCCAGTTACTGAAATGCCTGAAGACGTGAAGAAAGCAAAGAATGCCAAAATGCCCTT
CCATGTTGCTCTAACAGCAACTGATGCTCCTTACAGCAAATGGCAGTGTCGCATTATGTACTACTGGTATAAGAAGAAGAAAGACCTGCCCGGGTCGGAG
ATGGGAGGCTTTACACGGATTTTACACTCTGGAAAACCTGACAACTTGATGGATGAGATCCCCACAACTGTGGTTGATCCTCTGCCAGCTGGTCTTGATC
AGGGTTACGTTGTCCTAAATAGACCCTGGGCCTTTGTGCAGTGGCTGGAAAAGGCTTCTATCGAGGAAGAATATATTTTAATGGCAGAGCCTGATCACGT
ATTTATAAATCCCCTTCCAAATTTGGCACGCGGAGGGTTGCCAGCTGCTTTTCCTTTTTTCTATATCAAACCTGCTGATCACGAAAGCATCATACGGAAG
TATTATCCGGAGGAGAAGGGTCCTGTGACAAACGTTGATCCAATTGGCAACTCTCCTGTAATTATCAAGAAGGAATTGCTGGAAAAGATTGCTCCTACGT
GGATGAATATCTCCTTGAAAATGAAAAGAGACCAGGAGACTGATAAAGCTTTTGGATGGGTACTAGAAATGTATGCATATGCTGTGGCATCAGCTTTACA
TGATGTGCAGCACATTCTTCGGAAAGACTTTATGGTGCAGCCTCCATGGGATTTGGCAACAGGGAAGAATTTTATCATTCATTATACTTATGGATGTGAC
TACAATTTGAAGGGTGAGCTAACATATGGAAAAATTGGAGAGTGGCGGTTTGACAAAAGATCATATCTAGGTGGACCTATGCCAAGAAATCTCGCCTTGC
CCCCTCGAGGGGTTCCGGAAAGTGTGGTTACCCTTGTAAAGATGGTCAATGAAGCTACTGCAAACATTCCAAATTGGGACACAGAATAG
AA sequence
>Potri.001G028100.3 pacid=42787829 polypeptide=Potri.001G028100.3.p locus=Potri.001G028100 ID=Potri.001G028100.3.v4.1 annot-version=v4.1
MGRASLLVLILLTIGFFFATYNLVAMIMHYRSIGKWAHDDSDGQIFLDPVTEMPEDVKKAKNAKMPFHVALTATDAPYSKWQCRIMYYWYKKKKDLPGSE
MGGFTRILHSGKPDNLMDEIPTTVVDPLPAGLDQGYVVLNRPWAFVQWLEKASIEEEYILMAEPDHVFINPLPNLARGGLPAAFPFFYIKPADHESIIRK
YYPEEKGPVTNVDPIGNSPVIIKKELLEKIAPTWMNISLKMKRDQETDKAFGWVLEMYAYAVASALHDVQHILRKDFMVQPPWDLATGKNFIIHYTYGCD
YNLKGELTYGKIGEWRFDKRSYLGGPMPRNLALPPRGVPESVVTLVKMVNEATANIPNWDTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13500 unknown protein Potri.001G028100
[exp]
0 1
AT5G66160 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR ... Potri.005G111100
[exp]
2.44 0.9406
AT5G35960 Protein kinase family protein ... Potri.014G136300
[exp]
4.47 0.9241
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Potri.001G055201
[exp]
4.89 0.9356
AT2G01275 RING/FYVE/PHD zinc finger supe... Potri.004G093500
[exp]
6.00 0.9375
AT1G53035 unknown protein Potri.001G399900
[exp]
6.92 0.9223
AT3G51850 CPK13 calcium-dependent protein kina... Potri.006G101300
[exp]
7.34 0.9069
AT2G46690 SAUR-like auxin-responsive pro... Potri.015G006800
[exp]
7.34 0.8923
AT3G15220 Protein kinase superfamily pro... Potri.011G116300
[exp]
7.93 0.9203
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.009G087200
[exp]
9.79 0.9106
AT1G62040 ATG8C autophagy 8c, Ubiquitin-like s... Potri.004G013700
[exp]
10.67 0.8912

Potri.001G028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.