Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54400 542 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G07030 539 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G09750 360 / 2e-121 Eukaryotic aspartyl protease family protein (.1) AT1G01300 166 / 4e-46 Eukaryotic aspartyl protease family protein (.1) AT1G25510 160 / 4e-44 Eukaryotic aspartyl protease family protein (.1) AT3G61820 156 / 9e-43 Eukaryotic aspartyl protease family protein (.1) AT3G18490 148 / 1e-39 Eukaryotic aspartyl protease family protein (.1) AT5G10760 145 / 8e-39 Eukaryotic aspartyl protease family protein (.1) AT3G20015 137 / 1e-35 Eukaryotic aspartyl protease family protein (.1) AT5G10770 134 / 2e-34 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G195500 [exp] 676 / 0 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 415 / 1e-142 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 160 / 5e-44 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 159 / 7e-44 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 159 / 2e-43 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 155 / 3e-42 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 155 / 4e-42 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 151 / 1e-40 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 134 / 2e-34 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008654 [exp] 588 / 0 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026171 [exp] 532 / 0 AT5G07030 494 / 4e-174 Eukaryotic aspartyl protease family protein (.1) Lus10024148 [exp] 491 / 7e-175 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 489 / 8e-174 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 166 / 3e-46 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 135 / 9e-35 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 130 / 3e-33 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 127 / 6e-32 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10010157 [exp] 126 / 1e-31 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 125 / 4e-31 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.001G028200.1 pacid=42791981 polypeptide=Potri.001G028200.1.p locus=Potri.001G028200 ID=Potri.001G028200.1.v4.1 annot-version=v4.1 ATGAAAGCCTACCTCTTCTCCCTAGCTTTCCTATTCTTGTCCCTGGTCCAAGGGCTAAACACCAGAGGCCAAGGCACAACCGTCAAAGTCTTCCATGTCT ACAGCCCACAGTCCCCATTTAGGCCCTCAAAGCCAGTATCATGGGAAGACAGTGTGCTCCAAATGCTGGCCGAAGATCAAGCTAGGCTTCAGTTTTTGTC AAGCTTAGTGGGCAGAAAATCCTGGGTGCCAATTGCTTCAGGCAGACAGATTGTGCAGAGCCCAACTTACATTGTTAAGGCAAATGTTGGAACCCCAGCT CAGACATTTCTCATGGCTTTGGATACCAGCAATGATGCTGCTTGGATTCCTTGCAATGGCTGTGTTGGGTGTTCCTCTACTGTGTTCAACTCTGTTACGT CCACAACCTTCAAAACCCTCGGTTGTGATGCTCCTCAATGCAAGCAGGTACCAAACCCCACTTGCGGTGGCAGCACATGCACATGGAACACTACCTATGG CGGCTCCACCATTTTATCAAACCTCACACGGGACACAATTGCTCTATCTACTGACATTGTCCCTGGCTACACTTTTGGTTGCATCCAAAAAACCACAGGG AGCTCAGTGCCTCCTCAAGGACTTTTGGGCTTGGGGAGAGGTCCGTTGTCATTTTTGTCTCAAACCCAAGACCTATACAAATCCACATTCTCATACTGCT TGCCTAGCTTTAGGACTCTCAACTTTTCTGGGACATTGAGGCTTGGACCAGCTGGTCAGCCCCTGAGGATCAAGACCACACCACTGCTCAAGAACCCAAG GAGATCATCATTATACTATGTGAACTTGATTGGAATTAGAGTTGGTAGGAAGATTGTTGATATTCCTGCTAGTGCTCTGGCATTCAATCCAACAACTGGT GCTGGGACCATCTTTGATTCAGGCACTGTTTTCACCAGATTAGTTGCCCCAGTTTACACCGCGGTCCGTGATGAGTTCAGGAAGCGGGTTGGCAATGCAA TCGTGTCATCTCTAGGTGGGTTCGACACATGTTACACAGGACCAATCGTCGCACCCACCATGACATTCATGTTCTCAGGCATGAACGTAACATTGCCACC AGACAACCTACTAATCCGCAGCACTGCCGGTAGCACCTCTTGCTTGGCCATGGCTGCAGCCCCTGATAATGTGAATTCTGTGCTGAACGTGATAGCCAAC ATGCAGCAACAAAACCATAGGATTCTTTTTGATGTGCCCAATTCAAGGATTGGTGTGGCTCGTGAGCCATGTTCTTGA
AA sequence Show only first row Show all	>Potri.001G028200.1 pacid=42791981 polypeptide=Potri.001G028200.1.p locus=Potri.001G028200 ID=Potri.001G028200.1.v4.1 annot-version=v4.1 MKAYLFSLAFLFLSLVQGLNTRGQGTTVKVFHVYSPQSPFRPSKPVSWEDSVLQMLAEDQARLQFLSSLVGRKSWVPIASGRQIVQSPTYIVKANVGTPA QTFLMALDTSNDAAWIPCNGCVGCSSTVFNSVTSTTFKTLGCDAPQCKQVPNPTCGGSTCTWNTTYGGSTILSNLTRDTIALSTDIVPGYTFGCIQKTTG SSVPPQGLLGLGRGPLSFLSQTQDLYKSTFSYCLPSFRTLNFSGTLRLGPAGQPLRIKTTPLLKNPRRSSLYYVNLIGIRVGRKIVDIPASALAFNPTTG AGTIFDSGTVFTRLVAPVYTAVRDEFRKRVGNAIVSSLGGFDTCYTGPIVAPTMTFMFSGMNVTLPPDNLLIRSTAGSTSCLAMAAAPDNVNSVLNVIAN MQQQNHRILFDVPNSRIGVAREPCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	1.00	0.9003
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	3.00	0.8755
AT2G42110			unknown protein		Potri.016G045700 [exp]	3.74	0.8825
AT1G78172			unknown protein		Potri.002G096200 [exp]	4.00	0.8725
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	4.58	0.8572
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	7.07	0.8678
AT1G75060			unknown protein		Potri.002G133500 [exp]	7.48	0.8239
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	8.71	0.8125
AT4G18590			Nucleic acid-binding, OB-fold-...		Potri.010G239200 [exp]	9.48	0.8512
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Potri.012G128100 [exp]	11.48	0.7771

Compare expression of checked genes

Potri.001G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.