Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 343 / 2e-118 ARM repeat superfamily protein (.1) AT2G23140 100 / 2e-23 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 100 / 3e-23 PUB11 ARM repeat superfamily protein (.1) AT1G29340 92 / 3e-20 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G67340 89 / 2e-19 ARM repeat superfamily protein (.1) AT3G54850 84 / 1e-17 ATPUB14 plant U-box 14 (.1) AT2G28830 79 / 4e-16 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 79 / 4e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54790 76 / 5e-15 ARM repeat superfamily protein (.1.2) AT1G71020 75 / 9e-15 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G195400 [exp] 488 / 1e-175 AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) Potri.010G185900 [exp] 109 / 2e-26 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 108 / 3e-26 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 98 / 1e-22 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.011G071400 [exp] 98 / 2e-22 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.005G144700 [exp] 96 / 2e-21 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 95 / 2e-21 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.004G061800 [exp] 92 / 1e-20 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.005G225400 [exp] 91 / 5e-20 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024145 [exp] 409 / 2e-144 AT1G08315 390 / 2e-136 ARM repeat superfamily protein (.1) Lus10008655 [exp] 396 / 3e-139 AT1G08315 393 / 5e-138 ARM repeat superfamily protein (.1) Lus10039500 [exp] 398 / 1e-135 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10007511 [exp] 121 / 2e-30 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 111 / 4e-27 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10026170 [exp] 99 / 1e-25 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10007317 [exp] 105 / 8e-25 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10037970 [exp] 91 / 4e-20 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10029163 [exp] 91 / 5e-20 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10011514 [exp] 91 / 7e-20 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.001G028300.1 pacid=42790754 polypeptide=Potri.001G028300.1.p locus=Potri.001G028300 ID=Potri.001G028300.1.v4.1 annot-version=v4.1 ATGGAAGTGAAGCGCAGGACAGCGCGTTTACTAGTTACAAGGCTAGGTTCTGTCTCTGAGCAAACACGGTCTGAAGCCTTAGCTGAACTTCGCTTGATGA CCAAAAACGATGCCGAACCACGTCCGATCATTGCCGAAGCCGGTGCAATCCCGTATCTAGAAGAAACCCTTTACTCTTCTTCTCACGACTCACAAGATAA CGCAGCTGCAATTCTGCTGAACATCTCTATCTCTTCACGCACCGCCTTGATGTCAACGCGCGGCCTTCTTGATGCAATCTCTCATGTCCTACGCCATCAT GCGACCAATTCATCCCCCTTCGCTGTCCAGTCATCTGCTGCCACGTTGCACAGCCTTCTTGTTGATGATTCTTACCGACCCGTTATTGGGGCTAAGCGTG ATATTGTTTACTCTTTGATTGAAATAATCAAGAGGCCTAATTCGCCGCCGAGGTCTGTAAAGGATGCGCTGAAAGCCCTTTTTGGGATTGCTTTGTTTCC GTTGAATCGTGCGAATCTGATTGGTTTAGGTGGGGTGGCGGCGTTGTTTTCGTTGGTTTTGAAGGATGGGAGAGTGGGGATTGTGGAGGATGCGACGGCG GTGATTGCACAAATAGCAGGGTGTGCGGAGAGTGAGAGAGAGTTTTGGAAGGTTTCGGGGGTTAAGGTTTTGGTAGATTTACTGGATGTTGGGACGGGTT CGAGCGAGAGGGTTAAGGAGAATGCGGTGGGGGCTTTGTTGAATTTGGTGAGTTGTGGAGGGGGAGGAGTGGTGAAGCAGGTGAAGGAAATGGGACCGGG CGCGGTGGAGGGGATTAGGGATGTTGTGGAGAATGGGACCGCGAAAGGGAAGAGCAAAGGGATTGCATTGTTGAAAGTTGTTGAGGGTGGAGCAAAGGAA TGGGATTTTGCGATGAATACGCGTGAATTACCTTCTGTTGAATTCTAG
AA sequence Show only first row Show all	>Potri.001G028300.1 pacid=42790754 polypeptide=Potri.001G028300.1.p locus=Potri.001G028300 ID=Potri.001G028300.1.v4.1 annot-version=v4.1 MEVKRRTARLLVTRLGSVSEQTRSEALAELRLMTKNDAEPRPIIAEAGAIPYLEETLYSSSHDSQDNAAAILLNISISSRTALMSTRGLLDAISHVLRHH ATNSSPFAVQSSAATLHSLLVDDSYRPVIGAKRDIVYSLIEIIKRPNSPPRSVKDALKALFGIALFPLNRANLIGLGGVAALFSLVLKDGRVGIVEDATA VIAQIAGCAESEREFWKVSGVKVLVDLLDVGTGSSERVKENAVGALLNLVSCGGGGVVKQVKEMGPGAVEGIRDVVENGTAKGKSKGIALLKVVEGGAKE WDFAMNTRELPSVEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08315			ARM repeat superfamily protein...		Potri.001G028300 [exp]	0	1
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	2.23	0.7151
AT4G30510		ATATG18B	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G101200 [exp]	4.00	0.6961
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.001G469600 [exp]	4.35	0.6364
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	5.91	0.6836
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.019G124000 [exp]	7.34	0.6210
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.014G130000 [exp]	13.41	0.6591	Pt-EID1.2
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	18.97	0.7070
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	20.44	0.6240	CXIP4.1
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	21.21	0.6994
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	22.62	0.6372

Compare expression of checked genes

Potri.001G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.