Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 511 / 0 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 262 / 2e-84 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 260 / 5e-84 Chalcone and stilbene synthase family protein (.1) AT1G02050 239 / 8e-76 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G34520 60 / 1e-09 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G71160 51 / 6e-07 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT2G46720 51 / 1e-06 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145100 [exp] 520 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 515 / 0 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 515 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 512 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 511 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 508 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 461 / 2e-162 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 381 / 2e-132 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 265 / 1e-85 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 506 / 5e-179 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 474 / 1e-167 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 467 / 7e-165 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 464 / 2e-163 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 337 / 1e-114 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 308 / 4e-105 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 261 / 3e-84 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 253 / 4e-81 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 243 / 5e-77 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 240 / 6e-76 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G028600.1 pacid=42793211 polypeptide=Potri.001G028600.1.p locus=Potri.001G028600 ID=Potri.001G028600.1.v4.1 annot-version=v4.1 ATGGCATCCATTCTAGCTATTGGCACTGCAAATCCACCCAACTGTTTCGACCAGGCTGACTATCCAGACTTCTACTTCCGAGTCACTAAAAGCGAGCACA TGACACAGTTAAAGGACAAGTTCAAGAGAATATGTGAAAAATCCAAAATAAGGAAACGTTACATGTATATCACCGAAGATACTATCAAGAAGAACCCAAG CTTAAGCACCTACGATGCCGCGTCCCTCGATGCGCGTCAAGAAATTCTGGTCACTGAGGTACCCAAGCTCGGCAAGGAAGCAGCATTGAAGGCCATTGAA GAATGGGGCCAGCCCAAATCAAAGATCACCCACCTTATATTTTGCACTTCTTCAGGTACCCATATGCCAGGTGCAGATCATGAGCTTACTAAGCTCCTTG GCCTTGAACGTTCTGTCAAGAGATTCATGATGTATCAACAAGGCTGCTTCACAGCAGCCCTAGCCCTCCGCCTTTCCAAAGACCTTGCTGAGAATAATCC CGGGGCACGTGTTCTCATCGTGTGTTCTGAGAACATGACTGTTTGTTTCCGAGCACCATCTGAGACTCACTTGGATATTCTTGTAGGCTATGCGATTTTC TCTGACGGTGCTGCTGCTATCATTGTTGGGGCTGATCCTGACACAGCTACCGAGCGCCCATTATTTCAACTTGTGTCAGCCGAGCAGTGTATTGTTCCTG ACTCGGATGATGGAATAGTTGGTCACATACGTGAAATGGGGATTTCCTATTACTTGCATAAAATGGTGCCCAAAATCGTTGCGGAAGGCGCTGCGCAATG CTTGGTGGAGACATTCAATGCTCGATATGGGATCAAGGACTGGAATTCTCTGTTTTACGTTGTCCATCCTGGAGGTACAGGCGTTTTGAACAAGTTTGAA GAGCACATTGGCTTGACGAAAGATAAATTGAGAGCATCTCGGCATGTGCTATCTGAGTATGGAAACATGTGGGGTCCAAGTATGTTCTTCGTTCTTGATG AGATGAGGAGAAGATCAGCCAAGGAAGGGAAAGCCACCACTGGAGAAGGATTGGATCTAGGTGTGCTGTTCGGGTTCGGCCCTGGCGTAACTATCGAGAC CATAGTGCTCCGTAGTTTCGCTACGGATTGA
AA sequence Show only first row Show all	>Potri.001G028600.1 pacid=42793211 polypeptide=Potri.001G028600.1.p locus=Potri.001G028600 ID=Potri.001G028600.1.v4.1 annot-version=v4.1 MASILAIGTANPPNCFDQADYPDFYFRVTKSEHMTQLKDKFKRICEKSKIRKRYMYITEDTIKKNPSLSTYDAASLDARQEILVTEVPKLGKEAALKAIE EWGQPKSKITHLIFCTSSGTHMPGADHELTKLLGLERSVKRFMMYQQGCFTAALALRLSKDLAENNPGARVLIVCSENMTVCFRAPSETHLDILVGYAIF SDGAAAIIVGADPDTATERPLFQLVSAEQCIVPDSDDGIVGHIREMGISYYLHKMVPKIVAEGAAQCLVETFNARYGIKDWNSLFYVVHPGGTGVLNKFE EHIGLTKDKLRASRHVLSEYGNMWGPSMFFVLDEMRRRSAKEGKATTGEGLDLGVLFGFGPGVTIETIVLRSFATD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G028600 [exp]	0	1
					Potri.009G114701 [exp]	1.41	0.9541
AT4G35160			O-methyltransferase family pro...		Potri.013G120800 [exp]	4.24	0.9313	FOMT11,OOMT2.19
AT4G35160			O-methyltransferase family pro...		Potri.013G120900 [exp]	4.89	0.9272	Pt-OOMT2.3
AT1G20990			Cysteine/Histidine-rich C1 dom...		Potri.005G258800 [exp]	5.65	0.9256
					Potri.014G069900 [exp]	9.48	0.9096
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G115200 [exp]	10.00	0.9193	MADS1.5
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.002G174300 [exp]	11.66	0.9101
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	12.00	0.9143
AT5G66070			RING/U-box superfamily protein...		Potri.005G244900 [exp]	12.24	0.8867
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.009G098800 [exp]	15.23	0.8593

Compare expression of checked genes

Potri.001G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.