Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 181 / 7e-53 Mitochondrial transcription termination factor family protein (.1) AT1G21150 140 / 6e-38 Mitochondrial transcription termination factor family protein (.1) AT5G64950 115 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61980 112 / 2e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61970 110 / 7e-27 Mitochondrial transcription termination factor family protein (.1.2) AT1G62085 106 / 4e-25 Mitochondrial transcription termination factor family protein (.1) AT3G46950 101 / 2e-23 Mitochondrial transcription termination factor family protein (.1) AT1G62120 100 / 8e-23 Mitochondrial transcription termination factor family protein (.1) AT1G56380 95 / 2e-21 Mitochondrial transcription termination factor family protein (.1.2) AT1G62110 91 / 1e-19 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222000 [exp] 345 / 4e-117 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 345 / 6e-117 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 343 / 3e-116 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 341 / 2e-115 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 339 / 1e-114 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 339 / 1e-114 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 337 / 2e-113 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 331 / 1e-111 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 330 / 8e-111 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 288 / 1e-94 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 147 / 3e-40 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 146 / 4e-40 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 143 / 8e-39 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 142 / 2e-38 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 142 / 2e-38 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 137 / 1e-36 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 124 / 1e-31 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 121 / 8e-31 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 121 / 1e-30 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.001G029400.3 pacid=42788771 polypeptide=Potri.001G029400.3.p locus=Potri.001G029400 ID=Potri.001G029400.3.v4.1 annot-version=v4.1 ATGAGGCTCTCTCTGTGTCTCAAAATGAAGCTCTCTCCAAGTCTCCTGATTTCTCTCTTGCCAAAACGCTTTATAAAGACAGCACCTTCTCCTCCCACAA CTCCACTACCCACCAGAAGTAATACCACCTCATCTTCTCCATCATCGTTTACACTTCAATTTCTTGTTAACTCATGTGGGCTTCCTTTAGAAACTGCTCT TACTGCATCCAAGAAGTTCCATCTCAACGAGAAGAACATCCACAAGACTCAATCTTTGCTCCATTTCTTGAAATCTCACCACTTTGTGGACACGCATATC GCCGATCTGATAAAAAAGATGCCCGCTTTCCTTGGTTGTAAAGTAGAAAACAATCTAAAGCCCAAGTTCGAGTTCCTCGCCGCAAATGGCGTTGCTGGTA ACCTCCTTCCCCAACTTATCCTATCAAATCCTGATATTTTGTGGACGTCCTTGGATTCTACTATCAAACCATCTTTTAAGTTTTTGAAGTCTTTTCTTGG TACCAATGTGAAAATTACAGCGGCTCTTAAGCGTTGTTCATGGTTGTTGAGAGTTAATCGGAACAGAACTATGCAAACAAATATTGATTTGTTGATTAAA GAAGGATTGCCTCTTGACCGGCTTGCAAAACTCATTATCTCGAGTCCAAGATCTCTGCTATCTAAGCATGATAAGATAGTTTATGCAGTGAATTCTGTTA AGAATCTGGGCCTTGAAACAAACGATACTATGTTCATATATGCTCTTGGGGTGAAGATGAAAATGACTGACACGACTTGGAAGAAGAAAATTGAGGTGAT GAAGAGTTTGGGTTGGAGTGAAGAGGAGATTTTCGGCACTTTCAAGCGATGCCCTCAAATATTGCAATACTCGGAGAAGAAAATCAGGATTACCGTGGAT TTTTTTATCAATTCCGTTGATTTGGGACCAGAAATTCTACTGGTCTATCCTTCTTTGTTTTGCCTCTCAGTTGATAAGAGGGTTCGTCCATGGTATAATG TTATTAATGTTTTGAAGTCAAAGAACTTGATTAAAAGAGAAAAGAAGTTTCCTTCTTTGCTACTGATGAGTGAGAAGAAATTCTTGGAGAATTATGTTGA TAAGTATGCGGATGATGTTCCTGGTTTATGGGAGGTGTATACGGGCACTGCCAACACAAAGAAGAAAGGCACTTGA
AA sequence Show only first row Show all	>Potri.001G029400.3 pacid=42788771 polypeptide=Potri.001G029400.3.p locus=Potri.001G029400 ID=Potri.001G029400.3.v4.1 annot-version=v4.1 MRLSLCLKMKLSPSLLISLLPKRFIKTAPSPPTTPLPTRSNTTSSSPSSFTLQFLVNSCGLPLETALTASKKFHLNEKNIHKTQSLLHFLKSHHFVDTHI ADLIKKMPAFLGCKVENNLKPKFEFLAANGVAGNLLPQLILSNPDILWTSLDSTIKPSFKFLKSFLGTNVKITAALKRCSWLLRVNRNRTMQTNIDLLIK EGLPLDRLAKLIISSPRSLLSKHDKIVYAVNSVKNLGLETNDTMFIYALGVKMKMTDTTWKKKIEVMKSLGWSEEEIFGTFKRCPQILQYSEKKIRITVD FFINSVDLGPEILLVYPSLFCLSVDKRVRPWYNVINVLKSKNLIKREKKFPSLLLMSEKKFLENYVDKYADDVPGLWEVYTGTANTKKKGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.001G029400 [exp]	0	1
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	2.44	0.8877
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	4.00	0.9023
AT4G30150			unknown protein		Potri.004G167600 [exp]	4.89	0.8743
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	6.48	0.8872
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	13.41	0.8828
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	14.14	0.8695
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	14.38	0.8548
AT1G19370			unknown protein		Potri.014G180900 [exp]	14.49	0.8085
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	15.32	0.8758
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.004G149900 [exp]	17.60	0.8244

Compare expression of checked genes

Potri.001G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.