Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 2585 / 0 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G32250 140 / 6e-34 Protein kinase superfamily protein (.1.2.3) AT3G04710 82 / 7e-16 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G18950 78 / 2e-14 Integrin-linked protein kinase family (.1) AT2G28840 77 / 4e-14 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT2G31800 76 / 1e-13 Integrin-linked protein kinase family (.1) AT3G58760 75 / 2e-13 Integrin-linked protein kinase family (.1) AT1G62400 72 / 5e-13 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT1G63700 73 / 2e-12 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT2G43850 71 / 3e-12 Integrin-linked protein kinase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G274900 [exp] 2020 / 0 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.018G026400 [exp] 145 / 3e-35 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G255700 [exp] 138 / 3e-33 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G062000 [exp] 108 / 6e-24 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.017G007800 [exp] 82 / 1e-15 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.001G238800 [exp] 79 / 9e-15 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.005G054800 [exp] 77 / 5e-14 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.001G333600 [exp] 77 / 7e-14 AT5G14230 975 / 0.0 unknown protein Potri.013G042300 [exp] 76 / 7e-14 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039491 [exp] 2534 / 0 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024136 [exp] 2267 / 0 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024135 [exp] 300 / 3e-92 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001499 [exp] 132 / 4e-31 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 126 / 2e-29 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 119 / 4e-27 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 108 / 1e-23 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10020272 [exp] 92 / 1e-18 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 89 / 4e-18 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10012799 [exp] 80 / 2e-14 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.001G029600.1 pacid=42790470 polypeptide=Potri.001G029600.1.p locus=Potri.001G029600 ID=Potri.001G029600.1.v4.1 annot-version=v4.1 ATGAAAGTCCCTTGCTGCTCAGTTTGCCAAACGCGGTATGACGAGGAAGAGAGAGTTCCTCTACTTCTCCAATGCGGTCATGGATTCTGCAAAGACTGTC TCTCTCGAATGTTCTCTGCTTCTACCGATACAACACTTGTCTGCCCTAGATGCCGACACGTGTCGGTCGTAGGCAACTCAGTCACCGCACTGAAGAAGAA CTTCGCCGTTTTAGCTCTGCTCCATTCCTCCTCGTCGTCTTCGGCGGCGGCGAACTTCGATTGCGATTACACTGACGACGAGGGTGATGGTGACGAAGAG GATTTCGAGGAGGAGAGGTGTAGCCGCGGGTCCCACGCGTCGAGTTCTGGTGCCTGTGGGCCGGTGATTGATGTCGGGGCCCACCCAGAGGTGAAGTTGG TGAAGAAAATTGGTGAAGGGAGGAGTAAATCTGGGATGGAGACGTGGACGGCGGTGATTGGTGGCGGCGGGGTCCATGGGAAGAAGGTGTGTAGGCACCG GGTGGCGGTGAAGAAGGTGGAGATAGGGGAGGAGATGGAGGTGGACTGGGTGTTAGGGCAGTTGGAGAGTTTGAGAAAGGCGGCGATGTGGTGTAGGAAT GTGTGTACTTTTCATGGTGTTGTAAAAATGGATGGGTGTTTAGGGATTGTTACGGATAGGTGTTATGGTTCTGTTGAATCGGAGATGCAAAGGAATGAAG GAAGGCTTACTCTCGAGCAAATTCTAAGATATGGTGCTGATATAGCTCGAGGAGTGGCTGAACTTCACGCAGCAGGTGTTGTTTGCATGAACATAAAACC GTCGAATCTTCTTTTGGATTCAAGTGGTCGTGCGGTCGTTTCTGATTATGGACTTGCTGCAATTCTAAAGAAACCTGCCTGTAGGAAAGCTCGATCAGAG TGTGATTCTGCAAAAATCCATTCATGCATGGACTGTACAATGCTTAGTCCGAACTATACAGCTCCAGAGGCATGGGAGCCGGTAAAGAAATCATTGAATC TGTTCTGGGATGATGCAATAGGTATATCCGTGGAGTCAGACGCCTGGAGTTTTGGTTGTGCTTTGGTGGAGATGTGCACTGGTTCTATCCCGTGGGCTGT TTTAAGTGCAGATGAAATTTATCGAGCTGTTGTGAAGGGTCGAAAGTTGCCTCCACAGTATGCAAGTGTAGTAGGTGTTGGAATGCCTAGAGAATTGTGG AAGATGATTGGAGAATGCCTACAATTCAAAGCATCGAAAAGGCCAGCTTTTAGTGCAATGTTAGCAATATTCCTCCGTCATTTGCAGGAGTTGCCACGCA GCCCTCCTGCAAGTCCTGATAACAGCTTTGCAAAATATCCTAGGTCATATGTGAAGGAACCTCCCCTTGCTTCTGATTTGGAGGTATTTCAGGATAACCC TGGCCATCTACATCGATTAGTGTCAGAAGGGGATGTTAGTGGTGTTAGGGAATTACTTGCAAAGGTTGCATCACGAAATGACAATTTCCCAATATCTATG CTATTAGAAGCGCAGAATGCTGATGGCCAAACTGCTCTTCACTTAGCTTGCAGACGTGGTAGTTCAGAGCTTGTTAGGGCTATATTGGAGTACAGAGAGG CAGATGTTGATGTATTGGACAAAGATGGGGATCCTCCACTTGTTTTTGCTTTAGCTGCAGGATCCCCAGAATGTGTTCGTGCTCTCATTGAAAGAGGGGC TAATGTAAGATCTAGGTTGAGGGAAGGTTTTGGTCCATCTGTTGCTCATGTTTGTGCATACCACGGCCAACCTGATTGCATGCGTGAGCTGCTATTGGCT GGAGCTGATCCAAATGCAATTGATGATGAAGGTGAATCTGTATTGCACAGAGCTGTTTCCAAGAAATATACAGATTGTGCTCTTGTTATACTGGAAAATG GGGGTTGTGGGTCCATGGCTGTCCCAAATTCAAAAAATTTGACGCCATTGCACTTGTGTGTAGCAACATGGAATGTGGCTGTTGTGAGAAGGTGGGTAGA AGTTGCATCCCCAGAAGAAATTGCTGATGCCATTGATATACCAAGTCCTGTTGGAACTGCATTATGCATGGCGGCTGCTGCGAAGAAAGATCATGAAACT GAAGGGAGAGAACTTGTGCGAATATTACTTTTTGCTGGAGCAGATCCAACTGCCCAAGATGCTCAACATGGGCGAACAGCCTTACATACTGCTGCTATGG CTAATGATGTTGAATTGGTCAAAATTATTCTTGATGCTGGAGTGGATGTAAACATTCGGAACGTGCAGAATACAATACCTCTCCATGTAGCCTTGGCAAG AGGGGCAAAGTCATGTGTTGGGTTGCTCTTATCTGCAGGGGCAAATTGTAATATGCAGGATGATGAAGGGGACAATGCTTTCCACATAGCAGCTGAAACA GCAAAAATGATACGTGAGAATCTTGAATGGCTCATCCTTATGCTCAGGAATTCTAATGCTGCTGTTGAAGTTAGAAACCACAGTGGTAAGACACTCCGTG ACTTTTTGGAGGCCCTTCCTCGGGAATGGATTTCTGAAGATTTGATGGAGGCACTTGTGAATAGGGGAGTTCATCTATCTCCTACAATATTTGAAGTGGG GGATTGGGTGAAGTTCAAAAGAAGTGTCACTACTCCTACGCATGGGTGGCAAGGTGCAAAACACAAAAGTGTAGGCTTTGTGCAAACTGTTGTGGACAAG GACAACCTTATTGTGTCATTTTGCTCTGGAGAGGCTCGTGTGTTAGCCAATGAAGTTTTGAAGGTGATTCCTTTGGATAGGGGACAGCATGTCCAGCTTA AGCAAGATGTCAAAGAACCACGGTTTGGCTGGCGTGGTCAATCACGTGACAGCATCGGAACTGTTTTATGTGTTGACGATGATGGCATACTTCGTGTTGG ATTTCCGGGAGCATCTAGAGGATGGAAAGCTGACCCTGCCGAGATGGAAAGAGTCGAAGAATTTAAGGTGGGTGACTGGGTTCGCATCCGGCCCACACTT ACAACTGCCAAGCACGGTCTAGGATCTGTCACACCTGGGAGCATTGGTATTGTGTATTGTATTAGACCAGATAATAGTCTTTTGTTAGAGTTGAGCTATC TTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCCTGTTGCTCCTTTCAAGATTGGTGACCGGGTGTGTGTGAAGCGATCTGTTGCAGAACCTAG ATATGCTTGGGGCGGCGAAACACATCACAGTGTTGGAAGAATTAGTGAGATAGAGAATGATGGCTTGCTTATAATTGAAATACCAAATCGACCTATACCA TGGCAGGCTGATCCATCAGACATGGAAAAGGTTGAAGATTTTAAGGTTGGGGATTGGGTTAGAGTGAAGGCTTCAGTATCTTCTCCAAAGTATGGATGGG AAGACATCACACGGAACAGTATTGGGGTAATTCACAGCCTGGAAGAGGATGGTGACATGGGTGTGGCATTCTGTTTCAGAAGCAAGCCTTTTTGTTGCTC TGTGACAGATGTTGAAAAGGTGCCTCCTTTTGAAATGGGACAAGAGATACATGTCTTGTCATCTGTGACTCAACCACGTCTTGGATGGTCAAATGAAAGT CCTGCAACTGTTGGAAAGATTGTGAGAATTGACATGGATGGAGCTTTGAATGTGAGGGTTACTGGCAGACATAGCTTGTGGAAAGTTTCTCCTGGAGATG CAGAAAGGCTTTCGGGATTTGAAGTTGGTGATTGGGTACGTTCCAAACCTAGTTTGGGGACTAGACCTAGTTATGATTGGAATAGTATTGGGAAGGAAAG TTTAGCTGTTGTACACAGCATACAAGAGACAGGTTATCTAGAACTGGCTTGTTGTTTCCGTAAAGGAAGATGGATTGCTCATCACACAGATATTGAAAAG GTACCTTGTTTCAAAGTTGGGCAGCATGTTCGGTTTCGAACTGGACTGTCGGAGCCGAGATGGGGCTGGAGAGGGGCTCAGCCTGATTCGCGAGGCATAA TCACCTCTGTTCATGCTGATGGAGAAGTGAGGATTGCATTCTTTGATTTGCCAGGGTTGTGGAGAGGAGATCCCGCAGATCTCGAGGTTGAACATATATT TGAAGTGGGTGAGTGGGTGAAACTGAGGGGAGATGTTAGTAACTGGAAATCTGTTGGACCAGGCAGTGTGGGTGTTGTACAGGGTATAGGATATGATGGA GATGAGTGGGATGGAAGCATATATGTTGGTTTTTGTGGGGAGCAAGAAAGATGGGCGGGGCCTACTTCCCATCTTGAAAGAGTTGAAAGACTCATGGTTG GGCAGAAAGTTAGGGTTAAACTTTCTGTGAAGCAGCCAAGGTTTGGGTGGTCAGGCCACAGTCATGGAAGTGTTGGAACCATAGCGGCAATTGATGCTGA TGGGAAGCTGAGAATATATACTCCAGTAGGCTCCAAGACTTGGATGCTTGATCCATCAGAAGTGGAGCTGGTAGAGGATGAAGAACTTCACATTGGAGAT TGGGTGAAGGTTAGGGCATCCGTTTCAACACCAACACACCAGTGGGGAGAAGTGAATCATTCAAGCACTGGAGTGGTGCATCGGATGGAAAATGGGGACC TATGGGTTTCATTCTGTTTCCTGGAGAAGCTGTGGCTTTGCAAGGCTTTGGAAATGGAACGAATTAGACCATTCAAAGTAGGCGACAAGGTGAAAATTAG AGAAGGTCTGGTAACACCTCGGTGGGGGTGGGGAATGGAGACTCATGCAAGCAAGGGCCAGGTAGTTGGGGTAGATGCAAATGGAAAGTTGAGGATTAAG TTTCATTGGAGAGAAGGGAGGCCATGGATCGGAGATCCTGCTGACATTGTTCTTGATGAGAGCTAA
AA sequence Show only first row Show all	>Potri.001G029600.1 pacid=42790470 polypeptide=Potri.001G029600.1.p locus=Potri.001G029600 ID=Potri.001G029600.1.v4.1 annot-version=v4.1 MKVPCCSVCQTRYDEEERVPLLLQCGHGFCKDCLSRMFSASTDTTLVCPRCRHVSVVGNSVTALKKNFAVLALLHSSSSSSAAANFDCDYTDDEGDGDEE DFEEERCSRGSHASSSGACGPVIDVGAHPEVKLVKKIGEGRSKSGMETWTAVIGGGGVHGKKVCRHRVAVKKVEIGEEMEVDWVLGQLESLRKAAMWCRN VCTFHGVVKMDGCLGIVTDRCYGSVESEMQRNEGRLTLEQILRYGADIARGVAELHAAGVVCMNIKPSNLLLDSSGRAVVSDYGLAAILKKPACRKARSE CDSAKIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISVESDAWSFGCALVEMCTGSIPWAVLSADEIYRAVVKGRKLPPQYASVVGVGMPRELW KMIGECLQFKASKRPAFSAMLAIFLRHLQELPRSPPASPDNSFAKYPRSYVKEPPLASDLEVFQDNPGHLHRLVSEGDVSGVRELLAKVASRNDNFPISM LLEAQNADGQTALHLACRRGSSELVRAILEYREADVDVLDKDGDPPLVFALAAGSPECVRALIERGANVRSRLREGFGPSVAHVCAYHGQPDCMRELLLA GADPNAIDDEGESVLHRAVSKKYTDCALVILENGGCGSMAVPNSKNLTPLHLCVATWNVAVVRRWVEVASPEEIADAIDIPSPVGTALCMAAAAKKDHET EGRELVRILLFAGADPTAQDAQHGRTALHTAAMANDVELVKIILDAGVDVNIRNVQNTIPLHVALARGAKSCVGLLLSAGANCNMQDDEGDNAFHIAAET AKMIRENLEWLILMLRNSNAAVEVRNHSGKTLRDFLEALPREWISEDLMEALVNRGVHLSPTIFEVGDWVKFKRSVTTPTHGWQGAKHKSVGFVQTVVDK DNLIVSFCSGEARVLANEVLKVIPLDRGQHVQLKQDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTL TTAKHGLGSVTPGSIGIVYCIRPDNSLLLELSYLPNPWHCEPEEVEPVAPFKIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIP WQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFCCSVTDVEKVPPFEMGQEIHVLSSVTQPRLGWSNES PATVGKIVRIDMDGALNVRVTGRHSLWKVSPGDAERLSGFEVGDWVRSKPSLGTRPSYDWNSIGKESLAVVHSIQETGYLELACCFRKGRWIAHHTDIEK VPCFKVGQHVRFRTGLSEPRWGWRGAQPDSRGIITSVHADGEVRIAFFDLPGLWRGDPADLEVEHIFEVGEWVKLRGDVSNWKSVGPGSVGVVQGIGYDG DEWDGSIYVGFCGEQERWAGPTSHLERVERLMVGQKVRVKLSVKQPRFGWSGHSHGSVGTIAAIDADGKLRIYTPVGSKTWMLDPSEVELVEDEELHIGD WVKVRASVSTPTHQWGEVNHSSTGVVHRMENGDLWVSFCFLEKLWLCKALEMERIRPFKVGDKVKIREGLVTPRWGWGMETHASKGQVVGVDANGKLRIK FHWREGRPWIGDPADIVLDES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G029600 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	1.00	0.8899
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	2.44	0.8661
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	3.00	0.8465
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	8.36	0.8337
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.014G052600 [exp]	10.24	0.7791
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	10.58	0.8462
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	10.67	0.8029
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	12.16	0.7749
AT1G18950			DDT domain superfamily (.1)		Potri.015G067300 [exp]	12.48	0.7935
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	12.84	0.8106

Compare expression of checked genes

Potri.001G029600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.