Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06970 1438 / 0 Protein of unknown function (DUF810) (.1) AT4G11670 424 / 6e-130 Protein of unknown function (DUF810) (.1) AT2G20010 377 / 2e-114 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 371 / 8e-112 Protein of unknown function (DUF810) (.1) AT2G33420 366 / 2e-109 Protein of unknown function (DUF810) (.1) AT1G04470 340 / 8e-100 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108400 [exp] 511 / 1e-162 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 418 / 7e-129 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 404 / 1e-123 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 375 / 7e-113 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 360 / 9e-108 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 350 / 2e-103 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026160 [exp] 1539 / 0 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 1474 / 0 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 459 / 1e-142 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 413 / 3e-127 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 392 / 2e-119 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 348 / 2e-102 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 318 / 5e-93 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008431 [exp] 248 / 1e-71 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 228 / 2e-64 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 171 / 1e-45 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.001G030100.2 pacid=42793616 polypeptide=Potri.001G030100.2.p locus=Potri.001G030100 ID=Potri.001G030100.2.v4.1 annot-version=v4.1 ATGGAAGAGGAAAATGCCCTGGAGCTTTTACAAAGATACAGGAGGGACCGGAGAGTTCTTCTAGATTATATGCTTTCTGGTAGTTTAATTAAGAAAGTTG TAATGCCTCCTGGTGCGGTTACACTTGATGACGTGGATCTGGACCAAGTCAGTGTAGATTATGTTCTCAATTGTGTTAAGAAAGGTGGAATGCTTGAACT TTCGGAGGCTATAAGAGATTACCATGATAATACCGGCTTACCCCATATGAACAATACAGGTTCAGTAGATGAGTTTTTCTTGGTTACAAAACCTGAAACT TCAGGTTCACCTCCAAAAAGGGCACCACCTCCTGCTCCTATTTCAGCGCCAAATCCTGTTTTTGCACCGTCGCCTGTTGTGTCCTTGGCAAGTGTAGCAA AGTCAGAATCCTTTAACTCCACTGAAGTTCAAGAATTGACTGACTCTAATGAAGTTCGAGAATTGACTGTTGATGACATTGAAGATTTCGAGGATGATGA TGATCTCGAGGTAGTTGATAGTGTCAGAATGTCAAGACGCAATCCAAATGATGCTGCCGATCTTGTTCCTAAATTGCCCTCTTTTTCCACAGGTATCACA GATGATGACCTCCGTGAAACTGCATATGAAGTGCTCTTGGCGTGTGCTGGAGCATCAGGAGGCCTTATTGTTCCATCAAAAGAAAAAAAGAAAGACAAAA GGTCCAAGTTGATGAGAAAGCTTGGACGCAGTAAAACTGAGAATGCTGTGACCCATTCTCAGCGTGCAACTGGATTGGTTGGTTTGCTAGAAAACATGCG TGCCCAGATGGAGATATCCGAGGCAATGGACATAAGAACTAGACAAGGGCTGCTCAATGCTCTTGCTGGAAAAGTTGGAAAACGAATGGACACCCTATTG GTTCCACTGGAATTGTTATGTTGTATTTCTCGTTCAGAATTTTCTGATAAGAAAGCATATATACGGTGGCAAAAAAGGCAGTTATTCATGCTGGAGGAGG GGCTTATTAATCACCCAGTTGTTGGATTTGGTGAATCAGGGCGCAAACCAAGTGATTTGAGGATTCTTTTGGCAAAGATTGAGGAATCTGAGTTCCGTCC ATCTTCTGCGGGTGAAGTCCAACGAACAGAATGTTTGAGATCTCTCAGAGAGATTGCAATACCACTTGCAGAGAGGCCGGCTCGGGGTGACTTAACTGGT GAGGTATGCCATTGGGCTGATGGCTATCACCTCAATGTTAGACTGTATGAGAAACTGCTTCTGAGTGTCTTTGACATTTTGGACGAGGGGAAGCTGACAG AGGAAGTTGAGGAAATTCTTGAACTCTTGAAGTCAACCTGGCGTGTTTTAGGAATTACAGAAACCATCCATTACACATGCTATGCATCGGTATTAATTCG TCAGTATATCATCACACAAGAGCAGGGGCTCCTAAAACATGCCATTGAGCAGCTGAAGAAAATACCATTAAAAGAACAACGCGGACCACAAGAGAGGTTA CACTTGAAAAGTTTGCTTTCCAAAGTTGAAGGTGAAGAACTGCCTTTCTTTCAATCCCTTTTATCACCTGTTCAGAAATGGGCTGATAAGCAGCTAGGAG ACTACCATCTGAACTTTGCTGAGGACTCATCAGTAATGGAGGATGTAGTGTTAGTTGCAATGATCACCCGGAGGCTTCTCTTGGAAGAATCTGAAATGGC AATGCAACGTACATCTGTCATGGATCACGATCAGATTGAATCATTCATAGCATCATCCATTAAGAATGCATTTACAAGGATATTAGTGGTTGTTGATAAA CTAGATGCAATGGATGAGCATCCTTTGGCATTGCTTGCAGAAGAGATCAAGAAACTTCTAAAAAAAGAATCAACCATATTCACACCAATTTTGTCACAGA GGAATCCACAAGCAATTGTTGTTTCAGCATCACTTGTTCACAAGCTCTATGGGAACAAGTTGAAACCATTCCTTGATGGCTCCGAACATCTGACCGAGGA TGTTGTCTCTGTGTTTCCTGCTGCTGATAGCCTTGAGCAGTATATAATGGCACTCATCACTTCTGCATGTGGAGAGGGGAATATGGAAGTCAAATTCCGC AAACTAACTCCATATCAGATTGAATCTATATCTGGAACATTGGTCATGCGATGGGTCAATTCTCAGCTTGGACGAATTTTGGGTTGGGTTGAGCGTGCCA TTCAACAGGAGCGGTGGGAACCAATATCACCTCAACAGCGGCATGGGAGCTCAATTGTTGAGGTTTATAGGATCGTTGAAGAGACTGTTGATCAGTTCTT TTCTCTTAAAGTTCCAATGAGTTCCAAAGAGTTGAATGGCTTGTTTCGGGGTGTTGACAATGCATTCCAAGTTTATGCAAATCATGTCACTGACAAGTTG GCTGCAAAGGAAGACCTAATTCCACCAGTTCCTATTCTGACACGATACAGGAAGGAAGCTGGAATAAAGGCCTTCGTAAAGAAGGAACTGTTTGACTCGA GGATGCCTGAAGAGATAAAATCCAATGAAATTAATGTTCCAGCGACAGCAACACTTTGTGTTCAGTTAAATACTCTATATTATGCAATTAGTCAACTGAA TAAGTTGGAAGATAGCATTTGGGAACGATGGAATAGGAGAAAGCCTCGTGAGCAATTTATCAAGAAATCCATAGATGGGAATTCAGCAAGTTTCAAGCAG AAGGGAACATTTGATGGCAGTAGAAAAGATATAAATGCTGCTATGGATCGCATCTGTGAGTTTACTGGAACTAAGATCATCTTCTACGACTTGAAGGAAC CATTCATTGAAAATCTGTATAAACCCGCTGTTCCTCAATCTAGGCTGGAAGCAATAATTGAACCGCTTGACATAGAACTAAATGAACTCTGTGGTATCAT TGTGGAGCCCCTCAGAGATCGCATTGTGACGAGTCTTCTACAAGCTTCACTGGATGGCTTTCTCCGAGTTATATTGGATGGAGGACCATCACGATATTTC TGCCCAGGTGATGCAAAAATATTGGAAGATGATGTAGAAGTTTTGAAGGAATTTTTTATCTCTGGAGGAGATGGGCTTCCCAGAGGAGTAGTTGAAAACC ATGTAGCACGTGCTCGACATGTAATCAAGTTGCACAGCTATGAGACTAGAGAATTAATCGAGGACCTGAAATCTGTAAGCGGGGTGGAAAGGCAGCGCGG TGGAAGCAGACTAGGCGCTGATACCCCAACATTGTTGAGGATATTATGTCACCGGAGTGATTCAGAGGCCTCCCAGTTTCTCAAGAAGCAGTTCAAGATA CCCAAATCTTCAGTCTAG
AA sequence Show only first row Show all	>Potri.001G030100.2 pacid=42793616 polypeptide=Potri.001G030100.2.p locus=Potri.001G030100 ID=Potri.001G030100.2.v4.1 annot-version=v4.1 MEEENALELLQRYRRDRRVLLDYMLSGSLIKKVVMPPGAVTLDDVDLDQVSVDYVLNCVKKGGMLELSEAIRDYHDNTGLPHMNNTGSVDEFFLVTKPET SGSPPKRAPPPAPISAPNPVFAPSPVVSLASVAKSESFNSTEVQELTDSNEVRELTVDDIEDFEDDDDLEVVDSVRMSRRNPNDAADLVPKLPSFSTGIT DDDLRETAYEVLLACAGASGGLIVPSKEKKKDKRSKLMRKLGRSKTENAVTHSQRATGLVGLLENMRAQMEISEAMDIRTRQGLLNALAGKVGKRMDTLL VPLELLCCISRSEFSDKKAYIRWQKRQLFMLEEGLINHPVVGFGESGRKPSDLRILLAKIEESEFRPSSAGEVQRTECLRSLREIAIPLAERPARGDLTG EVCHWADGYHLNVRLYEKLLLSVFDILDEGKLTEEVEEILELLKSTWRVLGITETIHYTCYASVLIRQYIITQEQGLLKHAIEQLKKIPLKEQRGPQERL HLKSLLSKVEGEELPFFQSLLSPVQKWADKQLGDYHLNFAEDSSVMEDVVLVAMITRRLLLEESEMAMQRTSVMDHDQIESFIASSIKNAFTRILVVVDK LDAMDEHPLALLAEEIKKLLKKESTIFTPILSQRNPQAIVVSASLVHKLYGNKLKPFLDGSEHLTEDVVSVFPAADSLEQYIMALITSACGEGNMEVKFR KLTPYQIESISGTLVMRWVNSQLGRILGWVERAIQQERWEPISPQQRHGSSIVEVYRIVEETVDQFFSLKVPMSSKELNGLFRGVDNAFQVYANHVTDKL AAKEDLIPPVPILTRYRKEAGIKAFVKKELFDSRMPEEIKSNEINVPATATLCVQLNTLYYAISQLNKLEDSIWERWNRRKPREQFIKKSIDGNSASFKQ KGTFDGSRKDINAAMDRICEFTGTKIIFYDLKEPFIENLYKPAVPQSRLEAIIEPLDIELNELCGIIVEPLRDRIVTSLLQASLDGFLRVILDGGPSRYF CPGDAKILEDDVEVLKEFFISGGDGLPRGVVENHVARARHVIKLHSYETRELIEDLKSVSGVERQRGGSRLGADTPTLLRILCHRSDSEASQFLKKQFKI PKSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06970			Protein of unknown function (D...		Potri.001G030100 [exp]	0	1
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	5.91	0.9179
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	8.00	0.9246
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	8.60	0.9229
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	9.16	0.8951
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	11.66	0.8889
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	12.36	0.9004
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	12.60	0.9224
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	13.26	0.9187
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	14.96	0.9129
AT3G24840			Sec14p-like phosphatidylinosit...		Potri.002G243000 [exp]	15.68	0.9132

Compare expression of checked genes

Potri.001G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.