Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12270 675 / 0 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT2G19670 208 / 3e-61 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 207 / 9e-61 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G20020 190 / 6e-54 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT1G04870 149 / 2e-39 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G06930 126 / 2e-30 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 126 / 2e-30 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149400 [exp] 205 / 8e-60 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 199 / 1e-57 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 180 / 2e-50 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.018G071200 [exp] 149 / 1e-39 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.008G222700 [exp] 119 / 2e-28 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.010G014600 [exp] 118 / 5e-28 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.014G004000 [exp] 69 / 3e-13 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 47 / 5e-05 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026158 [exp] 696 / 0 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10008664 [exp] 689 / 0 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10000982 [exp] 205 / 1e-59 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 204 / 4e-59 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 184 / 2e-51 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10017367 [exp] 181 / 4e-50 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10010162 [exp] 176 / 2e-49 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10043295 [exp] 137 / 5e-35 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 137 / 5e-35 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043412 [exp] 127 / 1e-30 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12756 [poplar] [flax] zf-C2H2_2 C2H2 type zinc-finger (2 copies) CL0063 [poplar] [flax] NADP_Rossmann PF12847 [poplar] [flax] Methyltransf_18 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.001G030200.3 pacid=42788676 polypeptide=Potri.001G030200.3.p locus=Potri.001G030200 ID=Potri.001G030200.3.v4.1 annot-version=v4.1 ATGGCAAGTAACGACCAAACAGAACTCAACAAAGCTGAGAAATCAGTTATCGAGCAAGAATCCGATTCAGAATTCGAAGAAGAAAACGAAGACTGGGACG ATTGGGGAGAAGACGACGACAATGACGGTGGAGAAAACGACAAGCCTTTCATGTGTTTGTTTCTTGATTCACAGTTCAGTTCTTGCAGTGAGTTGTTCGA GCACTGTCGTTTGGCTCACAAGTTTGATTTTGATGGGATAAGGAAGGAACTGGGCTTGGATTTCTACGGTTCGTTTAAGCTAATCAACTATGTCAGGTCT CAGGTGGCAGAAAATAGATGTTGGAGTTGTGGGCTTGCCTGTCAATCCCACCAAGATATACAGAATCATGTACATGAAACAGTAAAGTTGAAAGACATTA AGCCTTTGTGGGATGATGATAAATATTTGAAACCTTTCATGCAAGATGATCCGTTACTGTACAGTTTCAATGAAGATGAAGAAGGTGAAGATAATCATAT GACGCTGGATGACCAAGAGGAGCTAATGAGGGATTTGAGGAATATTGATGAGATGTGCATTGAAGATACCGACACGCTAGAAAAATCTGCTCATGGCTAT GGAGTAAATGGAGCAAAAGAGGTTGCTTCTACTTCCAGCAGCCATGAGAACGTGGGAAATTCTTCAAAGATGGAAATGGTTAACGGAGATTCTGAAGAAC GTGTTGGTTCGTCAGATGGAAAGCCATCGGATAAGCATTCAAAAGTTTCTCTTATGAATCTTGTTGATAAGGATATCAAGAAAGCCAATGCAAATTATTT TGGGGCTTACAGTTCATTTGGTATACATAGAGAGATGATAAGCGATAAGGTTAGGATGGATGCTTATAGTCAAGCTATCTTGAAAAACCCTTCTCTCATG ACTGGTGCAGTTGTGATGGATGTAGGTTGTGGAACTGGCATATTAAGTCTCTTTGCTGCCAAAACAGGGGCTTCAAGAGTAATTGCAATTGAAGCCAGTG AGAAGATGGCTTCTGTGGCAACTCAGATTGCAAAAGAAAATGGCCTTTGGCGGTGCACTGAAGGCAATAACCAGTATACTGGAGTGATGGAGGTAGTTCA AGGTATGGTTGAAGAGATTGATAAATCCATACAAATTAAACCGCACAGTGTCGATGTATTGTTGAGTGAGTGGATGGGGTACTGCCTACTTTATGAGACA ATGCTGAGCTCAGTGCTGTTTGCCAGAGATAAATGGTTGAAGCCTGGGGGTGCCATCCTCCCTGACACAGCGAGTATTTATGCTGCTGGATTTGGAAAAG GTGGCACTAGTCTTCCATTCTGGGAAGAGGTGTATGGTTTCAATATGTCTTGTGTTGGCAAGGAACTTGTTCAGGATGCTGCTAAATTTCCTATTGTTGA TGTTGTGGATGAGAAGGATTTGGTGACTGATGCTGTGCTTCTCCAGACTTTTGACTTGGCAACCATGAAGCCCGATGAAGTGGATTTCACTGCAAGCATT GAGTTGGAACCAAAGTCGATCTGTCTGGCAAACAACTCCACTGAATTGACATCTAAAACAACCTGGTGTTATGGTGTTGTGTTGTGGTTTGATACTGGTT TTACCCCAAGGTTCTGCAAAGAAACTCCATCTGTTTTGTCTACATCACCATATACTCCAAAAACACATTGGTCCCAAACAATTTTCACCTTCCTTGAGCC AATAGCAATGGCACCAGGAAAACCCTATGTTGACAAATCCGCAGCTGTTGGCACAGATGCATGTCCTGCCTCAAGAATTCATCTACGCATCAGCATTGCC CGTGCTGTCGAACACCACCGCAGCATTGACATTTCAATTGAAACTTCTGGAGTTGACCTTGATGGACGGAAACGCTGTTGGCCAGTGCAGATATTCAATC TATCTTAA
AA sequence Show only first row Show all	>Potri.001G030200.3 pacid=42788676 polypeptide=Potri.001G030200.3.p locus=Potri.001G030200 ID=Potri.001G030200.3.v4.1 annot-version=v4.1 MASNDQTELNKAEKSVIEQESDSEFEEENEDWDDWGEDDDNDGGENDKPFMCLFLDSQFSSCSELFEHCRLAHKFDFDGIRKELGLDFYGSFKLINYVRS QVAENRCWSCGLACQSHQDIQNHVHETVKLKDIKPLWDDDKYLKPFMQDDPLLYSFNEDEEGEDNHMTLDDQEELMRDLRNIDEMCIEDTDTLEKSAHGY GVNGAKEVASTSSSHENVGNSSKMEMVNGDSEERVGSSDGKPSDKHSKVSLMNLVDKDIKKANANYFGAYSSFGIHREMISDKVRMDAYSQAILKNPSLM TGAVVMDVGCGTGILSLFAAKTGASRVIAIEASEKMASVATQIAKENGLWRCTEGNNQYTGVMEVVQGMVEEIDKSIQIKPHSVDVLLSEWMGYCLLYET MLSSVLFARDKWLKPGGAILPDTASIYAAGFGKGGTSLPFWEEVYGFNMSCVGKELVQDAAKFPIVDVVDEKDLVTDAVLLQTFDLATMKPDEVDFTASI ELEPKSICLANNSTELTSKTTWCYGVVLWFDTGFTPRFCKETPSVLSTSPYTPKTHWSQTIFTFLEPIAMAPGKPYVDKSAAVGTDACPASRIHLRISIA RAVEHHRSIDISIETSGVDLDGRKRCWPVQIFNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	0	1
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	2.82	0.9010
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	3.16	0.8824
AT1G79150			binding (.1)		Potri.005G096900 [exp]	3.46	0.8869
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	4.47	0.8842
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	6.00	0.8865
AT3G63090			Ubiquitin carboxyl-terminal hy...		Potri.002G220000 [exp]	7.21	0.8366
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	7.34	0.8673
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	7.74	0.8322
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	8.48	0.8750
AT4G28200			unknown protein		Potri.007G040000 [exp]	8.94	0.8663

Compare expression of checked genes

Potri.001G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.